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MDS_4257 MDS_4257 hemN hemN ccoN-2 ccoN-2 ccoO ccoO ccoO-2 ccoO-2 pap pap MDS_0117 MDS_0117 arcD arcD MDS_1180 MDS_1180 ccoP-2 ccoP-2 MDS_2129 MDS_2129
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4257Outer membrane protein. (230 aa)    
Predicted Functional Partners:
hemN
Coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.870
ccoN-2
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.800
ccoO
Cbb3-type cytochrome c oxidase subunit II.
  
    0.794
ccoO-2
Cbb3-type cytochrome c oxidase subunit II.
  
    0.794
pap
Hypothetical protein.
   
    0.791
MDS_0117
Alcohol dehydrogenase.
   
    0.775
arcD
Arginine/ornithine antiporter.
   
    0.756
MDS_1180
Beta-lactamase domain-containing protein.
  
    0.755
ccoP-2
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
  
 0.665
MDS_2129
UspA domain-containing protein.
 
  
 0.638
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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