STRINGSTRING
MDS_4357 MDS_4357 MDS_4356 MDS_4356 MDS_4355 MDS_4355 MDS_4558 MDS_4558 trpS trpS MDS_3278 MDS_3278 MDS_4358 MDS_4358 MDS_0103 MDS_0103 MDS_0549 MDS_0549 MDS_3244 MDS_3244 MDS_3245 MDS_3245
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4357SpoVR family protein. (521 aa)    
Predicted Functional Partners:
MDS_4356
Hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.992
MDS_4355
Putative serine protein kinase, PrkA.
 
  
 0.987
MDS_4558
Hypothetical protein.
   
  
 0.791
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.737
MDS_3278
Protein of unknown function DUF883, ElaB.
   
    0.698
MDS_4358
Hypothetical protein.
       0.636
MDS_0103
Nucleoside recognition domain-containing protein.
  
  
 0.541
MDS_0549
Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
   
    0.528
MDS_3244
Hypothetical protein.
   
  
 0.527
MDS_3245
Hypothetical protein.
   
  
 0.527
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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