STRINGSTRING
MDS_4367 MDS_4367 MDS_3950 MDS_3950 MDS_3170 MDS_3170 MDS_3657 MDS_3657 MDS_4622 MDS_4622 MDS_0872 MDS_0872 MDS_3132 MDS_3132 MDS_0693 MDS_0693 MDS_0182 MDS_0182 MDS_2274 MDS_2274 MDS_2929 MDS_2929
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4367Diguanylate cyclase/phosphodiesterase. (1244 aa)    
Predicted Functional Partners:
MDS_3950
Multi-sensor hybrid histidine kinase.
  
 
 0.945
MDS_3170
Integral membrane sensor hybrid histidine protein kinase.
 
 
 0.914
MDS_3657
Sensory box histidine kinase/response regulator.
  
 
 0.906
MDS_4622
PAS/PAC sensor signal transduction histidine kinase.
  
 
0.896
MDS_0872
Diguanylate cyclase/phosphodiesterase.
 
 
0.866
MDS_3132
Multi-sensor hybrid histidine kinase.
 
 0.861
MDS_0693
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
 
0.860
MDS_0182
Multi-sensor hybrid histidine kinase.
  
 
 0.857
MDS_2274
Putative sensory box histidine kinase/response regulator.
 
 
0.852
MDS_2929
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.804
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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