STRINGSTRING
MDS_4399 MDS_4399 MDS_0249 MDS_0249 MDS_0310 MDS_0310 MDS_3651 MDS_3651 MDS_3382 MDS_3382 MDS_3281 MDS_3281 MDS_3393 MDS_3393 MDS_1422 MDS_1422 MDS_3043 MDS_3043 MDS_1348 MDS_1348 MDS_3949 MDS_3949
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4399Diguanylate cyclase. (429 aa)    
Predicted Functional Partners:
MDS_0249
EAL domain-containing protein.
 
  
 0.811
MDS_0310
Diguanylate cyclase/phosphodiesterase.
 
 
 0.811
MDS_3651
Diguanylate cyclase/phosphodiesterase.
 
 
 0.811
MDS_3382
Diguanylate phosphodiesterase.
  
 0.802
MDS_3281
Diguanylate phosphodiesterase.
 
    0.783
MDS_3393
Diguanylate phosphodiesterase.
 
  
 0.756
MDS_1422
Diguanylate cyclase/phosphodiesterase.
 
    0.750
MDS_3043
Diguanylate cyclase/phosphodiesterase.
 
    0.742
MDS_1348
Diguanylate cyclase/phosphodiesterase.
 
    0.695
MDS_3949
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
 
 
0.596
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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