STRINGSTRING
MDS_4436 MDS_4436 rimK rimK MDS_2643 MDS_2643 MDS_2644 MDS_2644 MDS_4437 MDS_4437 MDS_4435 MDS_4435 MDS_4408 MDS_4408 MDS_2632 MDS_2632 MDS_4438 MDS_4438
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4436Hypothetical protein. (169 aa)    
Predicted Functional Partners:
rimK
SSU ribosomal protein S6P modification protein; Belongs to the RimK family.
 
     0.772
MDS_2643
Hypothetical protein.
 
     0.709
MDS_2644
alpha-L-glutamate ligase-like protein.
 
     0.689
MDS_4437
Metal dependent phosphohydrolase.
       0.568
MDS_4435
Methyl-accepting chemotaxis sensory transducer.
       0.525
MDS_4408
Hypothetical protein.
   
    0.523
MDS_2632
Mg2+ transporter protein, CorA family protein.
 
     0.442
MDS_4438
Putative acyltransferase.
       0.440
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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