STRINGSTRING
MDS_4447 MDS_4447 MDS_4448 MDS_4448 MDS_4449 MDS_4449 MDS_4450 MDS_4450 MDS_0532 MDS_0532 MDS_0534 MDS_0534 MDS_2848 MDS_2848 MDS_4456 MDS_4456 MDS_0535 MDS_0535 gcvP gcvP purU-2 purU-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4447Sarcosine oxidase gamma subunit family protein. (209 aa)    
Predicted Functional Partners:
MDS_4448
Sarcosine oxidase alpha subunit family protein; Belongs to the GcvT family.
 
 0.999
MDS_4449
Sarcosine oxidase delta subunit family protein.
 
 0.999
MDS_4450
Sarcosine oxidase beta subunit family protein.
 
 0.998
MDS_0532
Putative FMN oxidoreductase.
 
 
 0.977
MDS_0534
Hypothetical protein.
 
    0.946
MDS_2848
N-methyltryptophan oxidase.
  
 0.940
MDS_4456
Rieske (2Fe-2S) domain-containing protein.
 
  
 0.938
MDS_0535
Membrane dipeptidase.
 
    0.928
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.921
purU-2
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
  
 0.920
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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