Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_0305 | MDS_2097 | MDS_0305 | MDS_2097 | Cytochrome c5; It is unreactive with cytochrome c reductase or oxidase but seems to function as an intermediate in nitrate respiration of facultative anaerobic pseudmonads. | Hypothetical protein. | 0.610 |
MDS_0305 | MDS_4483 | MDS_0305 | MDS_4483 | Cytochrome c5; It is unreactive with cytochrome c reductase or oxidase but seems to function as an intermediate in nitrate respiration of facultative anaerobic pseudmonads. | Hypothetical protein. | 0.605 |
MDS_2097 | MDS_0305 | MDS_2097 | MDS_0305 | Hypothetical protein. | Cytochrome c5; It is unreactive with cytochrome c reductase or oxidase but seems to function as an intermediate in nitrate respiration of facultative anaerobic pseudmonads. | 0.610 |
MDS_2097 | MDS_2100 | MDS_2097 | MDS_2100 | Hypothetical protein. | Cbb3-type cytochrome oxidase component. | 0.831 |
MDS_2097 | MDS_4483 | MDS_2097 | MDS_4483 | Hypothetical protein. | Hypothetical protein. | 0.586 |
MDS_2097 | MDS_4597 | MDS_2097 | MDS_4597 | Hypothetical protein. | Hypothetical protein. | 0.457 |
MDS_2100 | MDS_2097 | MDS_2100 | MDS_2097 | Cbb3-type cytochrome oxidase component. | Hypothetical protein. | 0.831 |
MDS_2100 | MDS_4483 | MDS_2100 | MDS_4483 | Cbb3-type cytochrome oxidase component. | Hypothetical protein. | 0.574 |
MDS_2100 | MDS_4486 | MDS_2100 | MDS_4486 | Cbb3-type cytochrome oxidase component. | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.411 |
MDS_2100 | MDS_4597 | MDS_2100 | MDS_4597 | Cbb3-type cytochrome oxidase component. | Hypothetical protein. | 0.509 |
MDS_4480 | MDS_4483 | MDS_4480 | MDS_4483 | GTPase (dynamin-related)-like protein. | Hypothetical protein. | 0.579 |
MDS_4480 | MDS_4485 | MDS_4480 | MDS_4485 | GTPase (dynamin-related)-like protein. | Hypothetical protein. | 0.435 |
MDS_4480 | MDS_4486 | MDS_4480 | MDS_4486 | GTPase (dynamin-related)-like protein. | Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.459 |
MDS_4480 | metW | MDS_4480 | MDS_4482 | GTPase (dynamin-related)-like protein. | Methionine biosynthesis protein MetW. | 0.600 |
MDS_4480 | metXS | MDS_4480 | MDS_4481 | GTPase (dynamin-related)-like protein. | Homoserine O-acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine. | 0.600 |
MDS_4480 | rdgB | MDS_4480 | MDS_4484 | GTPase (dynamin-related)-like protein. | Putative deoxyribonucleotide triphosphate pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.586 |
MDS_4483 | MDS_0305 | MDS_4483 | MDS_0305 | Hypothetical protein. | Cytochrome c5; It is unreactive with cytochrome c reductase or oxidase but seems to function as an intermediate in nitrate respiration of facultative anaerobic pseudmonads. | 0.605 |
MDS_4483 | MDS_2097 | MDS_4483 | MDS_2097 | Hypothetical protein. | Hypothetical protein. | 0.586 |
MDS_4483 | MDS_2100 | MDS_4483 | MDS_2100 | Hypothetical protein. | Cbb3-type cytochrome oxidase component. | 0.574 |
MDS_4483 | MDS_4480 | MDS_4483 | MDS_4480 | Hypothetical protein. | GTPase (dynamin-related)-like protein. | 0.579 |
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