Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MDS_1022 | MDS_1121 | MDS_1022 | MDS_1121 | Hypothetical protein. | Molybdopterin biosynthesis protein MoeB. | 0.782 |
MDS_1022 | MDS_3568 | MDS_1022 | MDS_3568 | Hypothetical protein. | Hypothetical protein. | 0.561 |
MDS_1022 | MDS_4077 | MDS_1022 | MDS_4077 | Hypothetical protein. | Phosphomethylpyrimidine kinase. | 0.898 |
MDS_1022 | MDS_4495 | MDS_1022 | MDS_4495 | Hypothetical protein. | Thiamine biosynthesis protein ThiS. | 0.916 |
MDS_1022 | thiC | MDS_1022 | MDS_0682 | Hypothetical protein. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.885 |
MDS_1022 | thiE | MDS_1022 | MDS_4078 | Hypothetical protein. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.559 |
MDS_1022 | thiG | MDS_1022 | MDS_4494 | Hypothetical protein. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.912 |
MDS_1022 | thiO | MDS_1022 | MDS_1052 | Hypothetical protein. | Glycine oxidase ThiO. | 0.504 |
MDS_1121 | MDS_1022 | MDS_1121 | MDS_1022 | Molybdopterin biosynthesis protein MoeB. | Hypothetical protein. | 0.782 |
MDS_1121 | MDS_3568 | MDS_1121 | MDS_3568 | Molybdopterin biosynthesis protein MoeB. | Hypothetical protein. | 0.654 |
MDS_1121 | MDS_4077 | MDS_1121 | MDS_4077 | Molybdopterin biosynthesis protein MoeB. | Phosphomethylpyrimidine kinase. | 0.882 |
MDS_1121 | MDS_4495 | MDS_1121 | MDS_4495 | Molybdopterin biosynthesis protein MoeB. | Thiamine biosynthesis protein ThiS. | 0.955 |
MDS_1121 | thiC | MDS_1121 | MDS_0682 | Molybdopterin biosynthesis protein MoeB. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.897 |
MDS_1121 | thiE | MDS_1121 | MDS_4078 | Molybdopterin biosynthesis protein MoeB. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.787 |
MDS_1121 | thiG | MDS_1121 | MDS_4494 | Molybdopterin biosynthesis protein MoeB. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.946 |
MDS_1121 | tilS | MDS_1121 | MDS_3313 | Molybdopterin biosynthesis protein MoeB. | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.479 |
MDS_1121 | ttcA | MDS_1121 | MDS_3242 | Molybdopterin biosynthesis protein MoeB. | C32 tRNA thiolase; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.479 |
MDS_3568 | MDS_1022 | MDS_3568 | MDS_1022 | Hypothetical protein. | Hypothetical protein. | 0.561 |
MDS_3568 | MDS_1121 | MDS_3568 | MDS_1121 | Hypothetical protein. | Molybdopterin biosynthesis protein MoeB. | 0.654 |
MDS_3568 | MDS_4077 | MDS_3568 | MDS_4077 | Hypothetical protein. | Phosphomethylpyrimidine kinase. | 0.882 |
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