STRINGSTRING
MDS_4508 MDS_4508 MDS_4509 MDS_4509 MDS_4510 MDS_4510 MDS_4511 MDS_4511 MDS_0563 MDS_0563 MDS_2648 MDS_2648 MDS_0564 MDS_0564 MDS_2647 MDS_2647 MDS_2254 MDS_2254 MDS_2646 MDS_2646 MDS_1929 MDS_1929
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4508TetR family transcriptional regulator. (219 aa)    
Predicted Functional Partners:
MDS_4509
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.864
MDS_4510
Hypothetical protein.
 
  
 0.790
MDS_4511
Glucose-methanol-choline oxidoreductase.
 
  
 0.720
MDS_0563
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.653
MDS_2648
Peptidase C39, bacteriocin processing.
  
     0.587
MDS_0564
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.585
MDS_2647
Hypothetical protein.
  
     0.583
MDS_2254
Lipid-binding START domain-containing protein.
  
     0.566
MDS_2646
Aromatic hydrocarbon degradation membrane protein.
  
     0.544
MDS_1929
GntR family transcriptional regulator.
  
     0.538
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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