STRINGSTRING
MDS_4509 MDS_4509 MDS_4510 MDS_4510 MDS_4508 MDS_4508 MDS_4511 MDS_4511 MDS_0565 MDS_0565 MDS_1792 MDS_1792 MDS_3657 MDS_3657 MDS_3576 MDS_3576 MDS_0587 MDS_0587 putA putA MDS_0624 MDS_0624
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4509Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (476 aa)    
Predicted Functional Partners:
MDS_4510
Hypothetical protein.
 
  
 0.955
MDS_4508
TetR family transcriptional regulator.
 
  
 0.864
MDS_4511
Glucose-methanol-choline oxidoreductase.
 
  
 0.807
MDS_0565
TetR family transcriptional regulator.
 
  
 0.636
MDS_1792
Amino acid adenylation domain-containing protein.
  
 
 0.627
MDS_3657
Sensory box histidine kinase/response regulator.
  
 
 0.539
MDS_3576
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.461
MDS_0587
Glutamate synthase subunit alpha.
  
  
 0.437
putA
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
 
 
0.437
MDS_0624
AMP-dependent synthetase and ligase.
  
 
 0.430
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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