STRINGSTRING
MDS_4542 MDS_4542 MDS_0748 MDS_0748 MDS_1657 MDS_1657 MDS_2034 MDS_2034 MDS_2035 MDS_2035 glpK glpK MDS_4543 MDS_4543 MDS_4544 MDS_4544 MDS_4541 MDS_4541 MDS_1792 MDS_1792 pstA pstA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4542Glycerophosphoryl diester phosphodiesterase. (383 aa)    
Predicted Functional Partners:
MDS_0748
Glycerophosphodiester phosphodiesterase.
  
  
0.925
MDS_1657
Glycerophosphoryl diester phosphodiesterase.
     
0.921
MDS_2034
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
     
  0.900
MDS_2035
Ethanolamine ammonia lyase large subunit.
     
  0.900
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.868
MDS_4543
Hypothetical protein.
       0.638
MDS_4544
GTP-binding protein, HSR1-related protein.
       0.636
MDS_4541
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
  
    0.600
MDS_1792
Amino acid adenylation domain-containing protein.
   
 
 0.544
pstA
Phosphate ABC transporter, inner membrane subunit PstA.
  
  
 0.521
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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