STRINGSTRING
MDS_4544 MDS_4544 MDS_4543 MDS_4543 gpsA gpsA cmk cmk MDS_2159 MDS_2159 MDS_2160 MDS_2160 dnaG dnaG typA typA MDS_4542 MDS_4542 scpB scpB MDS_0347 MDS_0347
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4544GTP-binding protein, HSR1-related protein. (460 aa)    
Predicted Functional Partners:
MDS_4543
Hypothetical protein.
 
     0.952
gpsA
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.857
cmk
Cytidylate kinase.
  
  
 0.776
MDS_2159
Phage-like protein.
  
  
 0.765
MDS_2160
DNA primase-like protein.
  
  
 0.765
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.765
typA
Regulatory protein TypA.
  
  
 0.742
MDS_4542
Glycerophosphoryl diester phosphodiesterase.
       0.636
scpB
Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.597
MDS_0347
Hypothetical protein.
   
    0.525
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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