MDS_4558 protein (Pseudomonas mendocina NK01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MDS_4558

Hypothetical protein. (111 aa)

Predicted Functional Partners:

MDS_0074

0.862

MDS_4357

0.791

MDS_2180

0.762

MDS_2185

0.720

MDS_2175

0.677

cadR

0.590

MDS_2187

0.577

MDS_0114

0.566

MDS_4355

0.534

MDS_4801

0.524

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MDS_0074	MDS_2175	MDS_0074	MDS_2175	Peptidoglycan-binding LysM.	Phage late control gene D protein-like protein.	0.739
MDS_0074	MDS_2180	MDS_0074	MDS_2180	Peptidoglycan-binding LysM.	Tail sheath protein.	0.860
MDS_0074	MDS_2185	MDS_0074	MDS_2185	Peptidoglycan-binding LysM.	Phage P2 baseplate assembly gpW-like protein.	0.846
MDS_0074	MDS_2187	MDS_0074	MDS_2187	Peptidoglycan-binding LysM.	Phage P2 baseplate assembly gpV-like protein.	0.601
MDS_0074	MDS_4357	MDS_0074	MDS_4357	Peptidoglycan-binding LysM.	SpoVR family protein.	0.417
MDS_0074	MDS_4558	MDS_0074	MDS_4558	Peptidoglycan-binding LysM.	Hypothetical protein.	0.862
MDS_0074	MDS_4801	MDS_0074	MDS_4801	Peptidoglycan-binding LysM.	OsmC family protein.	0.402
MDS_0114	MDS_4558	MDS_0114	MDS_4558	Transglycosylase associated protein family.	Hypothetical protein.	0.566
MDS_2175	MDS_0074	MDS_2175	MDS_0074	Phage late control gene D protein-like protein.	Peptidoglycan-binding LysM.	0.739
MDS_2175	MDS_2180	MDS_2175	MDS_2180	Phage late control gene D protein-like protein.	Tail sheath protein.	0.993
MDS_2175	MDS_2185	MDS_2175	MDS_2185	Phage late control gene D protein-like protein.	Phage P2 baseplate assembly gpW-like protein.	0.992
MDS_2175	MDS_2187	MDS_2175	MDS_2187	Phage late control gene D protein-like protein.	Phage P2 baseplate assembly gpV-like protein.	0.977
MDS_2175	MDS_4558	MDS_2175	MDS_4558	Phage late control gene D protein-like protein.	Hypothetical protein.	0.677
MDS_2180	MDS_0074	MDS_2180	MDS_0074	Tail sheath protein.	Peptidoglycan-binding LysM.	0.860
MDS_2180	MDS_2175	MDS_2180	MDS_2175	Tail sheath protein.	Phage late control gene D protein-like protein.	0.993
MDS_2180	MDS_2185	MDS_2180	MDS_2185	Tail sheath protein.	Phage P2 baseplate assembly gpW-like protein.	0.994
MDS_2180	MDS_2187	MDS_2180	MDS_2187	Tail sheath protein.	Phage P2 baseplate assembly gpV-like protein.	0.990
MDS_2180	MDS_4558	MDS_2180	MDS_4558	Tail sheath protein.	Hypothetical protein.	0.762
MDS_2185	MDS_0074	MDS_2185	MDS_0074	Phage P2 baseplate assembly gpW-like protein.	Peptidoglycan-binding LysM.	0.846
MDS_2185	MDS_2175	MDS_2185	MDS_2175	Phage P2 baseplate assembly gpW-like protein.	Phage late control gene D protein-like protein.	0.992