STRINGSTRING
MDS_4562 MDS_4562 MDS_3146 MDS_3146 maiA maiA MDS_4561 MDS_4561 MDS_1792 MDS_1792 MDS_4563 MDS_4563 MDS_4145 MDS_4145 MDS_4560 MDS_4560 MDS_1956 MDS_1956 MDS_2413 MDS_2413 MDS_1231 MDS_1231
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4562Fumarylacetoacetate (FAA) hydrolase. (221 aa)    
Predicted Functional Partners:
MDS_3146
Homogentisate 1,2-dioxygenase.
  
  
 0.836
maiA
Maleylacetoacetate isomerase.
  
 
 0.691
MDS_4561
SdiA-regulated domain-containing protein.
       0.569
MDS_1792
Amino acid adenylation domain-containing protein.
  
  
 0.548
MDS_4563
FAD linked oxidase domain-containing protein.
 
   
 0.545
MDS_4145
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.478
MDS_4560
Hypothetical protein.
       0.440
MDS_1956
Prephenate dehydratase.
     
 0.421
MDS_2413
ATP-dependent DNA ligase.
  
  
 0.415
MDS_1231
ATP-dependent protease-like protein.
  
    0.412
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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