STRINGSTRING
MDS_4636 MDS_4636 MDS_4635 MDS_4635 MDS_1353 MDS_1353 MDS_4673 MDS_4673 MDS_2720 MDS_2720 MDS_4672 MDS_4672 trxB trxB trxB-2 trxB-2 MDS_4634 MDS_4634 MDS_4055 MDS_4055 MDS_1888 MDS_1888
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_46361-Cys peroxiredoxin. (212 aa)    
Predicted Functional Partners:
MDS_4635
NAD(P)H-dependent FMN reductase.
  
    0.902
MDS_1353
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.881
MDS_4673
Sulfate ABC transporter, periplasmic sulfate-binding protein.
  
    0.800
MDS_2720
NlpA lipoprotein.
  
    0.777
MDS_4672
Hypothetical protein.
   
    0.776
trxB
Thioredoxin reductase.
  
 
 0.770
trxB-2
Thioredoxin reductase.
  
 
 0.770
MDS_4634
ABC transporter, substrate-binding protein, aliphatic sufhonates.
  
    0.751
MDS_4055
Redoxin domain-containing protein.
  
 0.733
MDS_1888
Periplasmic protein thiol--disulfide oxidoreductase DsbE.
  
 0.728
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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