STRINGSTRING
MDS_4655 MDS_4655 MDS_4657 MDS_4657 MDS_4656 MDS_4656 potA-4 potA-4 MDS_4659 MDS_4659 MDS_4661 MDS_4661 betC betC MDS_4654 MDS_4654
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4655Aminopeptidase DmpA. (360 aa)    
Predicted Functional Partners:
MDS_4657
Polyamine ABC transporter permease PotB.
 
     0.804
MDS_4656
Ornithine carbamoyltransferase.
       0.788
potA-4
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
       0.776
MDS_4659
Polyamine ABC transporter periplasmic polyamine-binding protein PotD.
 
     0.646
MDS_4661
RpiR family transcriptional regulator.
 
    0.602
betC
Sulfatase.
  
     0.529
MDS_4654
NIPSNAP family containing protein.
       0.473
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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