STRINGSTRING
MDS_4663 MDS_4663 MDS_1792 MDS_1792 MDS_4662 MDS_4662 MDS_0251 MDS_0251 cobB cobB rpoS rpoS rpoD rpoD rpoH rpoH MDS_0303 MDS_0303 flgG flgG flgG-2 flgG-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4663AraC protein. (257 aa)    
Predicted Functional Partners:
MDS_1792
Amino acid adenylation domain-containing protein.
 
   
 0.731
MDS_4662
Fosmidomycin resistance protein.
 
   
 0.659
MDS_0251
GntR family transcriptional regulator.
  
  
 0.657
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.592
rpoS
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
   
 
 0.562
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.562
rpoH
RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.562
MDS_0303
XRE family transcriptional regulator.
  
 
 0.559
flgG
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.542
flgG-2
Flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.542
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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