MDS_4790 protein (Pseudomonas mendocina NK01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MDS_4790

TRAP transporter, 4TM/12TM fusion protein. (852 aa)

Predicted Functional Partners:

MDS_4791

0.990

MDS_4795

0.983

MDS_3229

0.840

MDS_4888

0.840

MDS_4789

0.510

MDS_3812

0.438

MDS_4886

0.433

MDS_3166

0.402

Your Current Organism:

Pseudomonas mendocina NK01

NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MDS_3166	MDS_4790	Acriflavin resistance protein.	TRAP transporter, 4TM/12TM fusion protein.	0.402
MDS_3229	MDS_4790	TRAP transporter solute receptor TAXI family protein.	TRAP transporter, 4TM/12TM fusion protein.	0.840
MDS_3229	MDS_4886	TRAP transporter solute receptor TAXI family protein.	Hypothetical protein.	0.788
MDS_3812	MDS_4790	TRAP-type uncharacterized transport system periplasmic component-like protein.	TRAP transporter, 4TM/12TM fusion protein.	0.438
MDS_4789	MDS_4790	Xanthine/uracil/vitamin C permease.	TRAP transporter, 4TM/12TM fusion protein.	0.510
MDS_4790	MDS_3166	TRAP transporter, 4TM/12TM fusion protein.	Acriflavin resistance protein.	0.402
MDS_4790	MDS_3229	TRAP transporter, 4TM/12TM fusion protein.	TRAP transporter solute receptor TAXI family protein.	0.840
MDS_4790	MDS_3812	TRAP transporter, 4TM/12TM fusion protein.	TRAP-type uncharacterized transport system periplasmic component-like protein.	0.438
MDS_4790	MDS_4789	TRAP transporter, 4TM/12TM fusion protein.	Xanthine/uracil/vitamin C permease.	0.510
MDS_4790	MDS_4791	TRAP transporter, 4TM/12TM fusion protein.	Immunogenic protein.	0.990
MDS_4790	MDS_4795	TRAP transporter, 4TM/12TM fusion protein.	TRAP transporter solute receptor TAXI family protein.	0.983
MDS_4790	MDS_4886	TRAP transporter, 4TM/12TM fusion protein.	Hypothetical protein.	0.433
MDS_4790	MDS_4888	TRAP transporter, 4TM/12TM fusion protein.	TRAP transporter solute receptor TAXI family protein.	0.840
MDS_4791	MDS_4790	Immunogenic protein.	TRAP transporter, 4TM/12TM fusion protein.	0.990
MDS_4791	MDS_4795	Immunogenic protein.	TRAP transporter solute receptor TAXI family protein.	0.901
MDS_4791	MDS_4886	Immunogenic protein.	Hypothetical protein.	0.415
MDS_4795	MDS_4790	TRAP transporter solute receptor TAXI family protein.	TRAP transporter, 4TM/12TM fusion protein.	0.983
MDS_4795	MDS_4791	TRAP transporter solute receptor TAXI family protein.	Immunogenic protein.	0.901
MDS_4886	MDS_3229	Hypothetical protein.	TRAP transporter solute receptor TAXI family protein.	0.788
MDS_4886	MDS_4790	Hypothetical protein.	TRAP transporter, 4TM/12TM fusion protein.	0.433