STRINGSTRING
MDS_4868 MDS_4868 MDS_4867 MDS_4867 dksA-2 dksA-2 folE2 folE2 rpsN rpsN MDS_4865 MDS_4865 rpmG rpmG MDS_0910 MDS_0910 rpmB rpmB MDS_4248 MDS_4248 MDS_4146 MDS_4146
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4868Cobalamin synthesis protein, P47K. (402 aa)    
Predicted Functional Partners:
MDS_4867
Hypothetical protein.
 
  
 0.983
dksA-2
TraR/DksA family transcriptional regulator; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.949
folE2
Putative GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.920
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.763
MDS_4865
Cobalamin synthesis protein, P47K.
 
  
0.704
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.586
MDS_0910
TonB-dependent receptor.
   
  
 0.578
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.571
MDS_4248
ABC transporter related protein.
  
  
 0.551
MDS_4146
Hypothetical protein.
   
 
 0.546
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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