STRINGSTRING
MDS_4888 MDS_4888 MDS_4887 MDS_4887 MDS_4886 MDS_4886 MDS_4790 MDS_4790
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4888TRAP transporter solute receptor TAXI family protein. (317 aa)    
Predicted Functional Partners:
MDS_4887
TRAP transporter, 4TM/12TM fusion protein.
 
 
  0.991
MDS_4886
Hypothetical protein.
 
    0.888
MDS_4790
TRAP transporter, 4TM/12TM fusion protein.
 
    0.840
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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