STRINGSTRING
MDS_4900 MDS_4900 MDS_4899 MDS_4899 MDS_0367 MDS_0367 MDS_0788 MDS_0788 puuE puuE MDS_4898 MDS_4898 uraH uraH MDS_0857 MDS_0857 uraD uraD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDS_4900Hypothetical protein. (237 aa)    
Predicted Functional Partners:
MDS_4899
Putative transcriptional regulator.
 
  
 0.942
MDS_0367
GntR family transcriptional regulator.
 
  
 0.796
MDS_0788
GntR family transcriptional regulator.
  
     0.617
puuE
Chitin deacetylase.
 
    0.571
MDS_4898
C4-dicarboxylate transporter DctA; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
    0.544
uraH
Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.466
MDS_0857
GntR family transcriptional regulator.
  
     0.443
uraD
Hypothetical protein.
 
     0.440
Your Current Organism:
Pseudomonas mendocina NK01
NCBI taxonomy Id: 1001585
Other names: P. mendocina NK-01, Pseudomonas mendocina NK-01, Pseudomonas mendocina str. NK-01, Pseudomonas mendocina strain NK-01
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