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ribB ribB ribH ribH MMP1348 MMP1348 ribK ribK ribC ribC MMP0230 MMP0230 trpF trpF thiL thiL MMP0791 MMP0791 MMP1644 MMP1644 rpoL rpoL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ribB3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. (247 aa)    
Predicted Functional Partners:
ribH
Riboflavin synthase, beta subunit (6,7-dimethyl-8-ribityllumazine synthase); Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.
 
 
 0.999
MMP1348
Conserved hypothetical protein; Belongs to the UPF0292 family.
 
 
 0.967
ribK
Conserved hypothetical archaeal protein; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
       0.910
ribC
Riboflavin synthase.
 
   
 0.901
MMP0230
Conserved hypothetical protein; Metal-dependent phosphohydrolase HD domain.
     
 0.888
trpF
N-(5'phosphoribosyl)anthranilate isomerase; Citation: Sterner R, Kleemann GR, Szadkowski H, Lustig A, Hennig M, Kirschner K. (1996). Protein Sci. 5:2000-8; Belongs to the TrpF family.
  
  
 0.761
thiL
AIR synthase related protein; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
 
   
 0.744
MMP0791
Transcriptional regulator, TetR Family Member.
     
 0.680
MMP1644
Conserved hypothetical archaeal protein.
       0.677
rpoL
DNA directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.
   
  
 0.670
Your Current Organism:
Methanococcus maripaludis S2
NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2
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