Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MMP0655 | MMP1234 | MMP0655 | MMP1234 | Hypothetical protein. | Conserved hypothetical membrane related protein. | 0.981 |
MMP0655 | MMP1639 | MMP0655 | MMP1639 | Hypothetical protein. | Acyl-CoA dehydrogenase. | 0.966 |
MMP0655 | thiC | MMP0655 | MMP0187 | Hypothetical protein. | Thiamine biosynthesis protein, putative; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.980 |
MMP0655 | thiE | MMP0655 | MMP1139 | Hypothetical protein. | Thiamine monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.978 |
MMP0655 | thiM | MMP0655 | MMP1138 | Hypothetical protein. | Hydroxyethylthiazole kinase family; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.633 |
MMP1234 | MMP0655 | MMP1234 | MMP0655 | Conserved hypothetical membrane related protein. | Hypothetical protein. | 0.981 |
MMP1234 | MMP1639 | MMP1234 | MMP1639 | Conserved hypothetical membrane related protein. | Acyl-CoA dehydrogenase. | 0.900 |
MMP1234 | thiC | MMP1234 | MMP0187 | Conserved hypothetical membrane related protein. | Thiamine biosynthesis protein, putative; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.897 |
MMP1234 | thiE | MMP1234 | MMP1139 | Conserved hypothetical membrane related protein. | Thiamine monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.914 |
MMP1234 | thiM | MMP1234 | MMP1138 | Conserved hypothetical membrane related protein. | Hydroxyethylthiazole kinase family; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.478 |
MMP1639 | MMP0655 | MMP1639 | MMP0655 | Acyl-CoA dehydrogenase. | Hypothetical protein. | 0.966 |
MMP1639 | MMP1234 | MMP1639 | MMP1234 | Acyl-CoA dehydrogenase. | Conserved hypothetical membrane related protein. | 0.900 |
MMP1639 | purO | MMP1639 | MMP1310 | Acyl-CoA dehydrogenase. | IMP cyclohydrolase; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP. | 0.408 |
MMP1639 | thi4 | MMP1639 | MMP1352 | Acyl-CoA dehydrogenase. | NAD binding site:TonB-dependent receptor protein:Thiamine biosynthesis Thi4 protein; Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur. | 0.883 |
MMP1639 | thiC | MMP1639 | MMP0187 | Acyl-CoA dehydrogenase. | Thiamine biosynthesis protein, putative; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.999 |
MMP1639 | thiE | MMP1639 | MMP1139 | Acyl-CoA dehydrogenase. | Thiamine monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |
MMP1639 | thiM | MMP1639 | MMP1138 | Acyl-CoA dehydrogenase. | Hydroxyethylthiazole kinase family; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.999 |
purC | purM-2 | MMP0540 | MMP1254 | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Citation: Tiedeman AA, DeMarini DJ, Parker J, Smith JM. (1990) J Bacteriol 172:6035-41; Belongs to the SAICAR synthetase family. | AIR synthase related protein:Phosphoribosylformylglycinamidine cyclo-ligase. | 0.997 |
purC | purO | MMP0540 | MMP1310 | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Citation: Tiedeman AA, DeMarini DJ, Parker J, Smith JM. (1990) J Bacteriol 172:6035-41; Belongs to the SAICAR synthetase family. | IMP cyclohydrolase; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP. | 0.833 |
purC | thiC | MMP0540 | MMP0187 | Phosphoribosylaminoimidazole-succinocarboxamide synthase; Citation: Tiedeman AA, DeMarini DJ, Parker J, Smith JM. (1990) J Bacteriol 172:6035-41; Belongs to the SAICAR synthetase family. | Thiamine biosynthesis protein, putative; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.795 |
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