Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71856.1 | ABK72015.1 | MSMEG_1952 | MSMEG_6153 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | 0.710 |
| ABK71856.1 | ABK72022.1 | MSMEG_1952 | MSMEG_3178 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.500 |
| ABK71856.1 | ABK72472.1 | MSMEG_1952 | MSMEG_4572 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144. | 0.525 |
| ABK71856.1 | ABK75344.1 | MSMEG_1952 | MSMEG_6275 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.666 |
| ABK71856.1 | dinB-3 | MSMEG_1952 | MSMEG_3172 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase IV 1; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.649 |
| ABK71856.1 | dnaA | MSMEG_1952 | MSMEG_6947 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity). | 0.547 |
| ABK71856.1 | dnaN | MSMEG_1952 | MSMEG_0001 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.984 |
| ABK71856.1 | dnaX | MSMEG_1952 | MSMEG_6285 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.578 |
| ABK71856.1 | polA | MSMEG_1952 | MSMEG_3839 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
| ABK71856.1 | recF | MSMEG_1952 | MSMEG_0003 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP (By similarity). | 0.475 |
| ABK72015.1 | ABK71856.1 | MSMEG_6153 | MSMEG_1952 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | 0.710 |
| ABK72015.1 | ABK72022.1 | MSMEG_6153 | MSMEG_3178 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.981 |
| ABK72015.1 | ABK72472.1 | MSMEG_6153 | MSMEG_4572 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144. | 0.994 |
| ABK72015.1 | ABK75344.1 | MSMEG_6153 | MSMEG_6275 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.973 |
| ABK72015.1 | dnaN | MSMEG_6153 | MSMEG_0001 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
| ABK72015.1 | dnaX | MSMEG_6153 | MSMEG_6285 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.923 |
| ABK72015.1 | polA | MSMEG_6153 | MSMEG_3839 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.559 |
| ABK72022.1 | ABK71856.1 | MSMEG_3178 | MSMEG_1952 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | 0.500 |
| ABK72022.1 | ABK72015.1 | MSMEG_3178 | MSMEG_6153 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | 0.981 |
| ABK72022.1 | ABK72472.1 | MSMEG_3178 | MSMEG_4572 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144. | 0.988 |
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