ABK70955.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70955.1

Hypothetical protein; Identified by Glimmer2; putative. (38 aa)

Predicted Functional Partners:

ABK73477.1

0.773

pntA

0.576

ABK74926.1

0.569

ABK74633.1

0.569

ABK71144.1

0.569

ABK70360.1

0.544

pntB

0.544

ABK75496.1

0.465

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70360.1	ABK70955.1	MSMEG_0108	MSMEG_0112	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Hypothetical protein; Identified by Glimmer2; putative.	0.544
ABK70360.1	ABK71144.1	MSMEG_0108	MSMEG_0116	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	0.506
ABK70360.1	ABK73477.1	MSMEG_0108	MSMEG_0111	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Putative magnesium transport protein; Identified by match to protein family HMM PF01544.	0.553
ABK70360.1	ABK74633.1	MSMEG_0108	MSMEG_0114	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Extracellular solute-binding protein, family protein 3; Identified by match to protein family HMM PF04069.	0.421
ABK70360.1	ABK74926.1	MSMEG_0108	MSMEG_0113	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Taurine transport system permease protein TauC; Identified by match to protein family HMM PF00528.	0.470
ABK70360.1	ABK75496.1	MSMEG_0108	MSMEG_0107	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Cell envelope-related function transcriptional attenuator common domain; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.	0.644
ABK70360.1	pntA	MSMEG_0108	MSMEG_0110	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	NAD(P) transhydrogenase, alpha subunit; Identified by similarity to SP:P07001; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00561.	0.727
ABK70360.1	pntB	MSMEG_0108	MSMEG_0109	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	0.793
ABK70955.1	ABK70360.1	MSMEG_0112	MSMEG_0108	Hypothetical protein; Identified by Glimmer2; putative.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.544
ABK70955.1	ABK71144.1	MSMEG_0112	MSMEG_0116	Hypothetical protein; Identified by Glimmer2; putative.	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	0.569
ABK70955.1	ABK73477.1	MSMEG_0112	MSMEG_0111	Hypothetical protein; Identified by Glimmer2; putative.	Putative magnesium transport protein; Identified by match to protein family HMM PF01544.	0.773
ABK70955.1	ABK74633.1	MSMEG_0112	MSMEG_0114	Hypothetical protein; Identified by Glimmer2; putative.	Extracellular solute-binding protein, family protein 3; Identified by match to protein family HMM PF04069.	0.569
ABK70955.1	ABK74926.1	MSMEG_0112	MSMEG_0113	Hypothetical protein; Identified by Glimmer2; putative.	Taurine transport system permease protein TauC; Identified by match to protein family HMM PF00528.	0.569
ABK70955.1	ABK75496.1	MSMEG_0112	MSMEG_0107	Hypothetical protein; Identified by Glimmer2; putative.	Cell envelope-related function transcriptional attenuator common domain; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350.	0.465
ABK70955.1	pntA	MSMEG_0112	MSMEG_0110	Hypothetical protein; Identified by Glimmer2; putative.	NAD(P) transhydrogenase, alpha subunit; Identified by similarity to SP:P07001; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00561.	0.576
ABK70955.1	pntB	MSMEG_0112	MSMEG_0109	Hypothetical protein; Identified by Glimmer2; putative.	NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.	0.544
ABK71144.1	ABK70360.1	MSMEG_0116	MSMEG_0108	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.506
ABK71144.1	ABK70955.1	MSMEG_0116	MSMEG_0112	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	Hypothetical protein; Identified by Glimmer2; putative.	0.569
ABK71144.1	ABK73477.1	MSMEG_0116	MSMEG_0111	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	Putative magnesium transport protein; Identified by match to protein family HMM PF01544.	0.567
ABK71144.1	ABK74633.1	MSMEG_0116	MSMEG_0114	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	Extracellular solute-binding protein, family protein 3; Identified by match to protein family HMM PF04069.	0.993