ABK71797.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71797.1

Conserved hypothetical protein; Identified by match to protein family HMM PF02405. (266 aa)

Predicted Functional Partners:

ABK72533.1

0.986

ABK75818.1

0.985

ABK75590.1

0.982

ABK71170.1

0.971

ABK74488.1

0.970

ABK74878.1

0.961

ABK73798.1

0.959

ABK73585.1

0.916

ABK72837.1

0.895

ABK75846.1

0.895

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71170.1	ABK71797.1	MSMEG_0135	MSMEG_0132	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	0.971
ABK71170.1	ABK72533.1	MSMEG_0135	MSMEG_1366	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.885
ABK71170.1	ABK72837.1	MSMEG_0135	MSMEG_5897	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.447
ABK71170.1	ABK73585.1	MSMEG_0135	MSMEG_0133	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.	0.971
ABK71170.1	ABK73798.1	MSMEG_0135	MSMEG_0137	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.955
ABK71170.1	ABK74488.1	MSMEG_0135	MSMEG_0134	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.966
ABK71170.1	ABK74878.1	MSMEG_0135	MSMEG_0138	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.850
ABK71170.1	ABK75590.1	MSMEG_0135	MSMEG_0136	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein, putative; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.920
ABK71170.1	ABK75818.1	MSMEG_0135	MSMEG_0139	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.922
ABK71797.1	ABK71170.1	MSMEG_0132	MSMEG_0135	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.971
ABK71797.1	ABK72533.1	MSMEG_0132	MSMEG_1366	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.986
ABK71797.1	ABK72837.1	MSMEG_0132	MSMEG_5897	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.895
ABK71797.1	ABK73585.1	MSMEG_0132	MSMEG_0133	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.	0.916
ABK71797.1	ABK73798.1	MSMEG_0132	MSMEG_0137	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.959
ABK71797.1	ABK74488.1	MSMEG_0132	MSMEG_0134	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.970
ABK71797.1	ABK74878.1	MSMEG_0132	MSMEG_0138	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.961
ABK71797.1	ABK75590.1	MSMEG_0132	MSMEG_0136	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor Mce family protein, putative; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.982
ABK71797.1	ABK75818.1	MSMEG_0132	MSMEG_0139	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.985
ABK71797.1	ABK75846.1	MSMEG_0132	MSMEG_5899	Conserved hypothetical protein; Identified by match to protein family HMM PF02405.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.895
ABK72533.1	ABK71170.1	MSMEG_1366	MSMEG_0135	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.885