Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70524.1 | ABK72418.1 | MSMEG_3404 | MSMEG_2663 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | Conserved hypothetical protein; Identified by match to protein family HMM PF02720. | 0.700 |
| ABK70524.1 | ABK74432.1 | MSMEG_3404 | MSMEG_0144 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | 0.772 |
| ABK70524.1 | ABK75381.1 | MSMEG_3404 | MSMEG_6573 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | Conserved hypothetical protein; Identified by match to protein family HMM PF02720. | 0.690 |
| ABK70576.1 | ABK73938.1 | MSMEG_4379 | MSMEG_4976 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | 0.672 |
| ABK70576.1 | ABK74432.1 | MSMEG_4379 | MSMEG_0144 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | 0.733 |
| ABK70576.1 | phd | MSMEG_4379 | MSMEG_1277 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the bacteriostatic effect of cognate toxin Doc. In M.smegmatis 3 TA systems (VapB-VapC, MazE-MazF and Phd-Doc) may be involved in monitoring the nutritional supply and physiological state of the cell, linking catabolic with anabolic reactions. | 0.587 |
| ABK70576.1 | thiC | MSMEG_4379 | MSMEG_0826 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.779 |
| ABK72418.1 | ABK70524.1 | MSMEG_2663 | MSMEG_3404 | Conserved hypothetical protein; Identified by match to protein family HMM PF02720. | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | 0.700 |
| ABK72418.1 | ABK74432.1 | MSMEG_2663 | MSMEG_0144 | Conserved hypothetical protein; Identified by match to protein family HMM PF02720. | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | 0.745 |
| ABK73938.1 | ABK70576.1 | MSMEG_4976 | MSMEG_4379 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | 0.672 |
| ABK73938.1 | ABK74432.1 | MSMEG_4976 | MSMEG_0144 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | 0.733 |
| ABK73938.1 | phd | MSMEG_4976 | MSMEG_1277 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the bacteriostatic effect of cognate toxin Doc. In M.smegmatis 3 TA systems (VapB-VapC, MazE-MazF and Phd-Doc) may be involved in monitoring the nutritional supply and physiological state of the cell, linking catabolic with anabolic reactions. | 0.592 |
| ABK73938.1 | thiC | MSMEG_4976 | MSMEG_0826 | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.789 |
| ABK74432.1 | ABK70524.1 | MSMEG_0144 | MSMEG_3404 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | 0.772 |
| ABK74432.1 | ABK70576.1 | MSMEG_0144 | MSMEG_4379 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | 0.733 |
| ABK74432.1 | ABK72418.1 | MSMEG_0144 | MSMEG_2663 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | Conserved hypothetical protein; Identified by match to protein family HMM PF02720. | 0.745 |
| ABK74432.1 | ABK73938.1 | MSMEG_0144 | MSMEG_4976 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | 0.733 |
| ABK74432.1 | ABK74772.1 | MSMEG_0144 | MSMEG_0146 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | Mosc domain protein; Identified by match to protein family HMM PF03473. | 0.598 |
| ABK74432.1 | ABK75381.1 | MSMEG_0144 | MSMEG_6573 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | Conserved hypothetical protein; Identified by match to protein family HMM PF02720. | 0.745 |
| ABK74432.1 | ABK76042.1 | MSMEG_0144 | MSMEG_4396 | HNH endonuclease; Identified by match to protein family HMM PF01844; match to protein family HMM PF02720. | Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. | 0.733 |
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