ABK73250.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK73250.1

MmpL6 protein; Identified by match to protein family HMM PF03176. (953 aa)

Predicted Functional Partners:

ABK71036.1

0.795

ABK74172.1

0.787

ABK73949.1

0.642

snm

0.636

ABK71982.1

0.573

ABK75153.1

0.567

ABK70936.1

0.567

ABK74560.1

0.545

eccB3

0.532

ABK70956.1

0.527

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70936.1	ABK70956.1	MSMEG_2333	MSMEG_0967	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.436
ABK70936.1	ABK71982.1	MSMEG_2333	MSMEG_3204	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	0.532
ABK70936.1	ABK73250.1	MSMEG_2333	MSMEG_0185	Conserved hypothetical protein.	MmpL6 protein; Identified by match to protein family HMM PF03176.	0.567
ABK70936.1	ABK73949.1	MSMEG_2333	MSMEG_4943	Conserved hypothetical protein.	Conserved hypothetical protein.	0.737
ABK70936.1	ABK74560.1	MSMEG_2333	MSMEG_0909	Conserved hypothetical protein.	acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.	0.763
ABK70936.1	eccB3	MSMEG_2333	MSMEG_0616	Conserved hypothetical protein.	Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.	0.757
ABK70936.1	snm	MSMEG_2333	MSMEG_0623	Conserved hypothetical protein.	Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.	0.719
ABK70956.1	ABK70936.1	MSMEG_0967	MSMEG_2333	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein.	0.436
ABK70956.1	ABK73250.1	MSMEG_0967	MSMEG_0185	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	MmpL6 protein; Identified by match to protein family HMM PF03176.	0.527
ABK70956.1	ABK73949.1	MSMEG_0967	MSMEG_4943	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein.	0.510
ABK70956.1	ABK74560.1	MSMEG_0967	MSMEG_0909	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.	0.467
ABK70956.1	ABK75153.1	MSMEG_0967	MSMEG_1053	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein.	0.436
ABK70956.1	snm	MSMEG_0967	MSMEG_0623	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.	0.426
ABK71036.1	ABK73250.1	MSMEG_0183	MSMEG_0185	Conserved hypothetical protein.	MmpL6 protein; Identified by match to protein family HMM PF03176.	0.795
ABK71036.1	ABK74172.1	MSMEG_0183	MSMEG_0186	Conserved hypothetical protein.	MmpS2 protein; Identified by match to protein family HMM PF05423.	0.778
ABK71982.1	ABK70936.1	MSMEG_3204	MSMEG_2333	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein.	0.532
ABK71982.1	ABK73250.1	MSMEG_3204	MSMEG_0185	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	MmpL6 protein; Identified by match to protein family HMM PF03176.	0.573
ABK71982.1	ABK73949.1	MSMEG_3204	MSMEG_4943	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein.	0.533
ABK71982.1	ABK74560.1	MSMEG_3204	MSMEG_0909	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643.	0.490
ABK71982.1	ABK75153.1	MSMEG_3204	MSMEG_1053	Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.	Conserved hypothetical protein.	0.537