STRINGSTRING
ABK73547.1 ABK73547.1 ABK71378.1 ABK71378.1 ABK76206.1 ABK76206.1 ABK69818.1 ABK69818.1 ABK71044.1 ABK71044.1 ABK75183.1 ABK75183.1 ABK73172.1 ABK73172.1 ABK74083.1 ABK74083.1 ABK73542.1 ABK73542.1 ABK73142.1 ABK73142.1 ABK70968.1 ABK70968.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73547.1IS1096, tnpA protein; Identified by similarity to GP:150005; match to protein family HMM PF01610. (440 aa)    
Predicted Functional Partners:
ABK71378.1
IS1096, tnpR protein; Identified by similarity to GP:150004; match to protein family HMM PF07929.
      
 0.588
ABK76206.1
Soul heme-binding protein.
      
 0.585
ABK69818.1
Conserved hypothetical protein.
      
 0.585
ABK71044.1
IS1096, tnpR protein; Identified by similarity to GP:150004; match to protein family HMM PF07929.
      
 0.581
ABK75183.1
Tena/thi-4 family protein; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family.
      
 0.581
ABK73172.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
ABK74083.1
RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
      
 0.516
ABK73542.1
Mce-family protein mce1f; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
      
 0.429
ABK73142.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
      
 0.429
ABK70968.1
Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
      
 0.429
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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