Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69676.1 | ABK70482.1 | MSMEG_0225 | MSMEG_5005 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | LprC protein. | 0.602 |
ABK69676.1 | ABK70936.1 | MSMEG_0225 | MSMEG_2333 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Conserved hypothetical protein. | 0.639 |
ABK69676.1 | ABK71982.1 | MSMEG_0225 | MSMEG_3204 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026. | 0.656 |
ABK69676.1 | ABK73296.1 | MSMEG_0225 | MSMEG_0226 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | MmpS5 protein; Identified by match to protein family HMM PF05423. | 0.784 |
ABK69676.1 | ABK73949.1 | MSMEG_0225 | MSMEG_4943 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Conserved hypothetical protein. | 0.713 |
ABK69676.1 | ABK74560.1 | MSMEG_0225 | MSMEG_0909 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643. | 0.638 |
ABK69676.1 | ABK75153.1 | MSMEG_0225 | MSMEG_1053 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Conserved hypothetical protein. | 0.643 |
ABK69676.1 | eccB3 | MSMEG_0225 | MSMEG_0616 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG. | 0.696 |
ABK69676.1 | eccC3 | MSMEG_0225 | MSMEG_0617 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Ftsk/spoiiie family protein; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG. | 0.625 |
ABK69676.1 | snm | MSMEG_0225 | MSMEG_0623 | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family. | 0.722 |
ABK70482.1 | ABK69676.1 | MSMEG_5005 | MSMEG_0225 | LprC protein. | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | 0.602 |
ABK70482.1 | ABK70936.1 | MSMEG_5005 | MSMEG_2333 | LprC protein. | Conserved hypothetical protein. | 0.771 |
ABK70482.1 | ABK71982.1 | MSMEG_5005 | MSMEG_3204 | LprC protein. | Conserved hypothetical protein; Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026. | 0.480 |
ABK70482.1 | ABK73949.1 | MSMEG_5005 | MSMEG_4943 | LprC protein. | Conserved hypothetical protein. | 0.638 |
ABK70482.1 | ABK74560.1 | MSMEG_5005 | MSMEG_0909 | LprC protein. | acyl-ACP thioesterase superfamily protein; Identified by match to protein family HMM PF01643. | 0.774 |
ABK70482.1 | ABK75153.1 | MSMEG_5005 | MSMEG_1053 | LprC protein. | Conserved hypothetical protein. | 0.774 |
ABK70482.1 | eccB3 | MSMEG_5005 | MSMEG_0616 | LprC protein. | Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG. | 0.719 |
ABK70482.1 | snm | MSMEG_5005 | MSMEG_0623 | LprC protein. | Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family. | 0.727 |
ABK70936.1 | ABK69676.1 | MSMEG_2333 | MSMEG_0225 | Conserved hypothetical protein. | MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. | 0.639 |
ABK70936.1 | ABK70482.1 | MSMEG_2333 | MSMEG_5005 | Conserved hypothetical protein. | LprC protein. | 0.771 |
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