STRINGSTRING
ABK71042.1 ABK71042.1 trmB trmB ABK73203.1 ABK73203.1 ABK72554.1 ABK72554.1 aftC aftC ABK70327.1 ABK70327.1 ABK75671.1 ABK75671.1 ABK70049.1 ABK70049.1 ABK72375.1 ABK72375.1 ABK75858.1 ABK75858.1 ABK71134.1 ABK71134.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ABK71042.1Conserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.973
ABK73203.1
Integral membrane protein; Identified by match to protein family HMM PF01594.
  
  
 0.823
ABK72554.1
Conserved hypothetical protein.
       0.757
aftC
Putative conserved integral membrane protein; Involved in the biosynthesis of the arabinogalactan (AG) region of the mycolylarabinogalactan-peptidoglycan (mAGP) complex, an essential component of the mycobacterial cell wall. Catalyzes the addition of an arabinofuranosyl (Araf) residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol (DPA) on the C-3 of an alpha-(1->5)-linked Araf from the arabinan backbone of AG.
  
    0.755
ABK70327.1
Conserved hypothetical protein.
 
  
 0.754
ABK75671.1
Probable conserved transmembrane protein.
  
  
 0.751
ABK70049.1
Conserved hypothetical protein.
  
    0.724
ABK72375.1
Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602.
 
  
 0.716
ABK75858.1
Conserved hypothetical protein.
  
    0.713
ABK71134.1
Probable arabinosyltransferase B; Identified by match to protein family HMM PF04602.
 
  
 0.705
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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