STRINGSTRING
ABK75813.1 ABK75813.1 ABK70226.1 ABK70226.1 ABK71363.1 ABK71363.1 ABK75222.1 ABK75222.1 ABK70602.1 ABK70602.1 ABK73670.1 ABK73670.1 ABK75735.1 ABK75735.1 ABK75211.1 ABK75211.1 ABK73690.1 ABK73690.1 ABK71774.1 ABK71774.1 pks pks
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75813.1Alpha/beta hydrolase fold; Identified by match to protein family HMM PF07859. (299 aa)    
Predicted Functional Partners:
ABK70226.1
Alpha/beta hydrolase fold family protein; Identified by match to protein family HMM PF07859.
 
  
0.723
ABK71363.1
acyl-CoA synthase; Identified by match to protein family HMM PF00501.
  
 
 0.695
ABK75222.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.678
ABK70602.1
Peptidase, S9A/B/C families; Identified by match to protein family HMM PF00326; match to protein family HMM PF07859.
  
   
 0.633
ABK73670.1
isovaleryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
  
  
 0.620
ABK75735.1
Choline dehydrogenase; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199.
  
  
 0.590
ABK75211.1
Conserved hypothetical protein.
   
 0.589
ABK73690.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118.
  
    0.557
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.545
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
 0.542
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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