ABK71594.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71594.1

AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501. (495 aa)

Predicted Functional Partners:

ABK70367.1

0.825

pks

0.739

ABK71774.1

0.731

ABK70260.1

0.712

ABK70529.1

0.692

pks5

0.686

ABK75882.1

0.652

rplF

0.636

ABK72398.1

0.632

ABK75637.1

0.630

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70260.1	ABK70529.1	MSMEG_4952	MSMEG_6767	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.692
ABK70260.1	ABK71594.1	MSMEG_4952	MSMEG_0318	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.	0.712
ABK70260.1	ABK71774.1	MSMEG_4952	MSMEG_6392	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.784
ABK70260.1	ABK72398.1	MSMEG_4952	MSMEG_0019	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.634
ABK70260.1	ABK75882.1	MSMEG_4952	MSMEG_2131	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.478
ABK70260.1	pks	MSMEG_4952	MSMEG_0408	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.703
ABK70260.1	pks5	MSMEG_4952	MSMEG_4727	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.682
ABK70260.1	rplF	MSMEG_4952	MSMEG_1470	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.636
ABK70367.1	ABK71594.1	MSMEG_0320	MSMEG_0318	Putative phosphotriesterase; Identified by match to protein family HMM PF02126.	AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.	0.825
ABK70367.1	ABK75637.1	MSMEG_0320	MSMEG_0321	Putative phosphotriesterase; Identified by match to protein family HMM PF02126.	Transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721.	0.608
ABK70529.1	ABK70260.1	MSMEG_6767	MSMEG_4952	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.692
ABK70529.1	ABK71594.1	MSMEG_6767	MSMEG_0318	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.	0.692
ABK70529.1	ABK71774.1	MSMEG_6767	MSMEG_6392	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.964
ABK70529.1	ABK72398.1	MSMEG_6767	MSMEG_0019	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.997
ABK70529.1	ABK75882.1	MSMEG_6767	MSMEG_2131	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.791
ABK70529.1	pks	MSMEG_6767	MSMEG_0408	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.966
ABK70529.1	pks5	MSMEG_6767	MSMEG_4727	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.903
ABK70529.1	rplF	MSMEG_6767	MSMEG_1470	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.411
ABK71594.1	ABK70260.1	MSMEG_0318	MSMEG_4952	AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.712
ABK71594.1	ABK70367.1	MSMEG_0318	MSMEG_0320	AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.	Putative phosphotriesterase; Identified by match to protein family HMM PF02126.	0.825