ABK74406.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK74406.1

acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028. (411 aa)

Predicted Functional Partners:

ABK72252.1

0.895

ABK75290.1

0.843

ABK75718.1

0.842

ABK75958.1

0.827

ABK75196.1

0.823

ABK76164.1

0.823

ABK71679.1

0.778

ABK75990.1

0.698

etfB

0.695

etfA

0.695

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71679.1	ABK72252.1	MSMEG_5773	MSMEG_6585	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.781
ABK71679.1	ABK74406.1	MSMEG_5773	MSMEG_0323	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028.	0.778
ABK71679.1	ABK75196.1	MSMEG_5773	MSMEG_5248	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	acyl-[ACP] desaturase; Identified by match to protein family HMM PF03405.	0.981
ABK71679.1	ABK75290.1	MSMEG_5773	MSMEG_5045	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	D-2-hydroxyglutarate dehydrogenase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.785
ABK71679.1	ABK75718.1	MSMEG_5773	MSMEG_6686	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.781
ABK71679.1	ABK75958.1	MSMEG_5773	MSMEG_5247	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	Identified by match to protein family HMM PF02562.	0.828
ABK71679.1	ABK76164.1	MSMEG_5773	MSMEG_5774	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.993
ABK72252.1	ABK71679.1	MSMEG_6585	MSMEG_5773	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	0.781
ABK72252.1	ABK74406.1	MSMEG_6585	MSMEG_0323	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028.	0.895
ABK72252.1	ABK75196.1	MSMEG_6585	MSMEG_5248	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	acyl-[ACP] desaturase; Identified by match to protein family HMM PF03405.	0.826
ABK72252.1	ABK75290.1	MSMEG_6585	MSMEG_5045	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	D-2-hydroxyglutarate dehydrogenase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.844
ABK72252.1	ABK75718.1	MSMEG_6585	MSMEG_6686	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.457
ABK72252.1	ABK75958.1	MSMEG_6585	MSMEG_5247	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	Identified by match to protein family HMM PF02562.	0.828
ABK72252.1	ABK75990.1	MSMEG_6585	MSMEG_5720	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.702
ABK72252.1	ABK76164.1	MSMEG_6585	MSMEG_5774	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.	0.825
ABK72252.1	etfA	MSMEG_6585	MSMEG_2352	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.	0.790
ABK72252.1	etfB	MSMEG_6585	MSMEG_2351	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.	0.799
ABK74406.1	ABK71679.1	MSMEG_0323	MSMEG_5773	acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028.	Fatty acid desaturase; Identified by match to protein family HMM PF03405.	0.778
ABK74406.1	ABK72252.1	MSMEG_0323	MSMEG_6585	acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.895
ABK74406.1	ABK75196.1	MSMEG_0323	MSMEG_5248	acyl-CoA dehydrogenase, short-chain specific, putative; Identified by match to protein family HMM PF08028.	acyl-[ACP] desaturase; Identified by match to protein family HMM PF03405.	0.823

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About