Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70818.1 | ABK71151.1 | MSMEG_4540 | MSMEG_0357 | Identified by match to protein family HMM PF00583. | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | 0.471 |
ABK71151.1 | ABK70818.1 | MSMEG_0357 | MSMEG_4540 | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | Identified by match to protein family HMM PF00583. | 0.471 |
ABK71151.1 | ABK74887.1 | MSMEG_0357 | MSMEG_0356 | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | Acetyltransferase. | 0.564 |
ABK71151.1 | ABK75645.1 | MSMEG_0357 | MSMEG_3513 | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | Enhanced intracellular survival protein. | 0.468 |
ABK71151.1 | nrdB | MSMEG_0357 | MSMEG_0358 | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily. | 0.675 |
ABK74887.1 | ABK71151.1 | MSMEG_0356 | MSMEG_0357 | Acetyltransferase. | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | 0.564 |
ABK74887.1 | nrdB | MSMEG_0356 | MSMEG_0358 | Acetyltransferase. | Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily. | 0.479 |
ABK75645.1 | ABK71151.1 | MSMEG_3513 | MSMEG_0357 | Enhanced intracellular survival protein. | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | 0.468 |
nrdB | ABK71151.1 | MSMEG_0358 | MSMEG_0357 | Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily. | Transmembrane transport protein; Identified by match to protein family HMM PF05977; match to protein family HMM PF07690. | 0.675 |
nrdB | ABK74887.1 | MSMEG_0358 | MSMEG_0356 | Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily. | Acetyltransferase. | 0.479 |