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mmpL4b mmpL4b mmpS4 mmpS4 gtf1 gtf1 mmpl4a mmpl4a mps2 mps2 ABK70520.1 ABK70520.1 ABK73949.1 ABK73949.1 rfbB rfbB snm snm ABK76208.1 ABK76208.1 eccB3 eccB3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmpL4bPutative transport protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833. (994 aa)    
Predicted Functional Partners:
mmpS4
MmpS4 protein; Identified by match to protein family HMM PF05423.
  
  
 0.957
gtf1
Putative glycosyl transferase; Identified by match to protein family HMM PF03033.
  
  
 0.807
mmpl4a
Mmp14a protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
 
  
0.776
mps2
Linear gramicidin synthetase subunit D; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746.
 
 
 0.722
ABK70520.1
Probable conserved membrane protein.
   
  
 0.701
ABK73949.1
Conserved hypothetical protein.
  
    0.681
rfbB
dTDP-glucose 4,6-dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6- deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction (By similarity). Involved in the biosynthesis of the dTDP-L-rhamnose which is a component of the critical linker, D- N-acetylglucosamine-L-rhamnose disaccharide, which connects the galactan region of arabinogalactan to peptidoglycan via a phosphodiester linkage.
   
  
 0.678
snm
Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.
  
    0.670
ABK76208.1
Lsr2 protein.
  
  
 0.655
eccB3
Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.
 
   0.631
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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