gtf1 protein (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

gtf1

Putative glycosyl transferase; Identified by match to protein family HMM PF03033. (422 aa)

Predicted Functional Partners:

mmpL4b

0.807

tylF

0.790

mmpS4

0.782

rfbB

0.777

fadE5

0.761

ABK72257.1

0.761

ABK73314.1

0.757

mmpl4a

0.754

pks

0.733

ABK71204.1

0.726

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71204.1	ABK73314.1	MSMEG_0391	MSMEG_0409	Rmt3 protein.	Condensation domain protein; Identified by match to protein family HMM PF00668.	0.711
ABK71204.1	gtf1	MSMEG_0391	MSMEG_0389	Rmt3 protein.	Putative glycosyl transferase; Identified by match to protein family HMM PF03033.	0.726
ABK71204.1	pks	MSMEG_0391	MSMEG_0408	Rmt3 protein.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.781
ABK71204.1	tylF	MSMEG_0391	MSMEG_0388	Rmt3 protein.	Macrocin-O-methyltransferase; Identified by match to protein family HMM PF05711.	0.498
ABK72257.1	fadE5	MSMEG_0413	MSMEG_0406	Conserved hypothetical protein.	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.522
ABK72257.1	gtf1	MSMEG_0413	MSMEG_0389	Conserved hypothetical protein.	Putative glycosyl transferase; Identified by match to protein family HMM PF03033.	0.761
ABK72257.1	mmpL4b	MSMEG_0413	MSMEG_0382	Conserved hypothetical protein.	Putative transport protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.	0.589
ABK72257.1	mmpS4	MSMEG_0413	MSMEG_0380	Conserved hypothetical protein.	MmpS4 protein; Identified by match to protein family HMM PF05423.	0.526
ABK72257.1	mmpl4a	MSMEG_0413	MSMEG_0381	Conserved hypothetical protein.	Mmp14a protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.	0.589
ABK72257.1	rfbB	MSMEG_0413	MSMEG_1512	Conserved hypothetical protein.	dTDP-glucose 4,6-dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6- deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction (By similarity). Involved in the biosynthesis of the dTDP-L-rhamnose which is a component of the critical linker, D- N-acetylglucosamine-L-rhamnose disaccharide, which connects the galactan region of arabinogalactan to peptidoglycan via a phosphodiester linkage.	0.517
ABK73314.1	ABK71204.1	MSMEG_0409	MSMEG_0391	Condensation domain protein; Identified by match to protein family HMM PF00668.	Rmt3 protein.	0.711
ABK73314.1	gtf1	MSMEG_0409	MSMEG_0389	Condensation domain protein; Identified by match to protein family HMM PF00668.	Putative glycosyl transferase; Identified by match to protein family HMM PF03033.	0.757
ABK73314.1	mmpl4a	MSMEG_0409	MSMEG_0381	Condensation domain protein; Identified by match to protein family HMM PF00668.	Mmp14a protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.	0.441
ABK73314.1	pks	MSMEG_0409	MSMEG_0408	Condensation domain protein; Identified by match to protein family HMM PF00668.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.865
fadE5	ABK72257.1	MSMEG_0406	MSMEG_0413	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Conserved hypothetical protein.	0.522
fadE5	gtf1	MSMEG_0406	MSMEG_0389	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Putative glycosyl transferase; Identified by match to protein family HMM PF03033.	0.761
fadE5	mmpL4b	MSMEG_0406	MSMEG_0382	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Putative transport protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.	0.518
fadE5	mmpS4	MSMEG_0406	MSMEG_0380	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	MmpS4 protein; Identified by match to protein family HMM PF05423.	0.610
fadE5	mmpl4a	MSMEG_0406	MSMEG_0381	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Mmp14a protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.	0.435
fadE5	pks	MSMEG_0406	MSMEG_0408	acyl-coA-dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.578