Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70257.1 | ABK70832.1 | MSMEG_5686 | MSMEG_0834 | Conserved hypothetical protein. | Tuberculin related peptide. | 0.772 |
ABK70257.1 | ABK72725.1 | MSMEG_5686 | MSMEG_6932 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.580 |
ABK70257.1 | ABK73864.1 | MSMEG_5686 | MSMEG_0420 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.738 |
ABK70257.1 | ABK74249.1 | MSMEG_5686 | MSMEG_1598 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.666 |
ABK70257.1 | ABK75511.1 | MSMEG_5686 | MSMEG_3817 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by match to protein family HMM PF04167. | 0.694 |
ABK70657.1 | ABK71393.1 | MSMEG_0419 | MSMEG_0417 | Integral membrane protein. | Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. | 0.997 |
ABK70657.1 | ABK73685.1 | MSMEG_0419 | MSMEG_0416 | Integral membrane protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.896 |
ABK70657.1 | ABK73864.1 | MSMEG_0419 | MSMEG_0420 | Integral membrane protein. | Conserved hypothetical protein. | 0.807 |
ABK70657.1 | sdhC | MSMEG_0419 | MSMEG_1672 | Integral membrane protein. | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970. | 0.441 |
ABK70832.1 | ABK70257.1 | MSMEG_0834 | MSMEG_5686 | Tuberculin related peptide. | Conserved hypothetical protein. | 0.772 |
ABK70832.1 | ABK72725.1 | MSMEG_0834 | MSMEG_6932 | Tuberculin related peptide. | Conserved hypothetical protein. | 0.628 |
ABK70832.1 | ABK73864.1 | MSMEG_0834 | MSMEG_0420 | Tuberculin related peptide. | Conserved hypothetical protein. | 0.741 |
ABK70832.1 | ABK74249.1 | MSMEG_0834 | MSMEG_1598 | Tuberculin related peptide. | Conserved hypothetical protein. | 0.694 |
ABK70832.1 | ABK75511.1 | MSMEG_0834 | MSMEG_3817 | Tuberculin related peptide. | Conserved hypothetical protein; Identified by match to protein family HMM PF04167. | 0.751 |
ABK71393.1 | ABK70657.1 | MSMEG_0417 | MSMEG_0419 | Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Integral membrane protein. | 0.997 |
ABK71393.1 | ABK73685.1 | MSMEG_0417 | MSMEG_0416 | Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Hypothetical protein; Identified by Glimmer2; putative. | 0.602 |
ABK71393.1 | ABK73864.1 | MSMEG_0417 | MSMEG_0420 | Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Conserved hypothetical protein. | 0.730 |
ABK71393.1 | sdhB | MSMEG_0417 | MSMEG_1669 | Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P51053; match to protein family HMM TIGR00384. | 0.923 |
ABK71393.1 | sdhC | MSMEG_0417 | MSMEG_1672 | Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970. | 0.998 |
ABK72725.1 | ABK70257.1 | MSMEG_6932 | MSMEG_5686 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.580 |
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