STRINGSTRING
ABK73864.1 ABK73864.1 ABK73685.1 ABK73685.1 sdhC sdhC ABK70657.1 ABK70657.1 sdhB sdhB ABK74249.1 ABK74249.1 ABK72725.1 ABK72725.1 ABK70832.1 ABK70832.1 ABK75511.1 ABK75511.1 ABK70257.1 ABK70257.1 ABK71393.1 ABK71393.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73864.1Conserved hypothetical protein. (98 aa)    
Predicted Functional Partners:
ABK73685.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.922
sdhC
Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970.
  
  
 0.831
ABK70657.1
Integral membrane protein.
 
  
 0.807
sdhB
Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P51053; match to protein family HMM TIGR00384.
 
  
 0.776
ABK74249.1
Conserved hypothetical protein.
  
    0.761
ABK72725.1
Conserved hypothetical protein.
  
    0.755
ABK70832.1
Tuberculin related peptide.
  
    0.741
ABK75511.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04167.
  
    0.739
ABK70257.1
Conserved hypothetical protein.
  
    0.738
ABK71393.1
Succinate dehydrogenase; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384.
 
  
 0.730
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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