STRINGSTRING
ABK71248.1 ABK71248.1 aroK aroK ABK75262.1 ABK75262.1 ABK69951.1 ABK69951.1 ABK74137.1 ABK74137.1 ABK74028.1 ABK74028.1 ABK71405.1 ABK71405.1 ABK75464.1 ABK75464.1 ABK75701.1 ABK75701.1 ABK71965.1 ABK71965.1 xylB xylB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71248.1Inner membrane permease YgbN; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791. (481 aa)    
Predicted Functional Partners:
aroK
Shikimate kinase; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313.
 
  
 0.855
ABK75262.1
Oxidoreductase, FAD-linked.
  
    0.656
ABK69951.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
 
  
 0.622
ABK74137.1
6-phosphogluconate dehydrogenase, decarboxylating; Identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00872.
 
  
 0.542
ABK74028.1
Putative xylulose kinase; Identified by match to protein family HMM PF00370.
 
  
 0.500
ABK71405.1
Glycerate kinase; Identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.
  
  
 0.473
ABK75464.1
Carbohydrate kinase, fggy; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
  
 0.434
ABK75701.1
Xylulose kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; Belongs to the FGGY kinase family.
  
  
 0.431
ABK71965.1
Aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
  
  
 0.416
xylB
Xylulokinase; Identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
  
  
 0.411
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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