Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70278.1 | ABK72195.1 | MSMEG_0496 | MSMEG_0497 | Coenzyme B12-dependent glycerol dehydrogenase small subunit. | Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286. | 0.998 |
ABK70278.1 | ABK73688.1 | MSMEG_0496 | MSMEG_0498 | Coenzyme B12-dependent glycerol dehydrogenase small subunit. | Hypothetical protein; Identified by Glimmer2; putative. | 0.497 |
ABK72195.1 | ABK70278.1 | MSMEG_0497 | MSMEG_0496 | Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286. | Coenzyme B12-dependent glycerol dehydrogenase small subunit. | 0.998 |
ABK72195.1 | ABK73688.1 | MSMEG_0497 | MSMEG_0498 | Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286. | Hypothetical protein; Identified by Glimmer2; putative. | 0.498 |
ABK72195.1 | ABK74985.1 | MSMEG_0497 | MSMEG_0499 | Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286. | Amino acid permease-associated region; Identified by match to protein family HMM PF00324. | 0.404 |
ABK73688.1 | ABK70278.1 | MSMEG_0498 | MSMEG_0496 | Hypothetical protein; Identified by Glimmer2; putative. | Coenzyme B12-dependent glycerol dehydrogenase small subunit. | 0.497 |
ABK73688.1 | ABK72195.1 | MSMEG_0498 | MSMEG_0497 | Hypothetical protein; Identified by Glimmer2; putative. | Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286. | 0.498 |
ABK73688.1 | ABK74985.1 | MSMEG_0498 | MSMEG_0499 | Hypothetical protein; Identified by Glimmer2; putative. | Amino acid permease-associated region; Identified by match to protein family HMM PF00324. | 0.579 |
ABK74985.1 | ABK72195.1 | MSMEG_0499 | MSMEG_0497 | Amino acid permease-associated region; Identified by match to protein family HMM PF00324. | Glycerol dehydratase large subunit; Identified by match to protein family HMM PF02286. | 0.404 |
ABK74985.1 | ABK73688.1 | MSMEG_0499 | MSMEG_0498 | Amino acid permease-associated region; Identified by match to protein family HMM PF00324. | Hypothetical protein; Identified by Glimmer2; putative. | 0.579 |