ABK71672.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71672.1

acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770. (378 aa)

Predicted Functional Partners:

ABK75437.1

0.813

ABK73891.1

0.811

ABK70553.1

0.782

ABK76167.1

0.780

ABK72194.1

0.778

ABK75099.1

0.776

ABK74441.1

0.775

ABK70325.1

0.771

ABK72105.1

0.760

ABK75177.1

0.759

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70325.1	ABK71672.1	MSMEG_6016	MSMEG_0578	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	0.771
ABK70325.1	ABK72105.1	MSMEG_6016	MSMEG_2223	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.591
ABK70553.1	ABK71672.1	MSMEG_2997	MSMEG_0578	Conserved hypothetical protein.	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	0.782
ABK70553.1	ABK72105.1	MSMEG_2997	MSMEG_2223	Conserved hypothetical protein.	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.484
ABK70553.1	ABK72194.1	MSMEG_2997	MSMEG_4806	Conserved hypothetical protein.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.581
ABK70553.1	ABK73891.1	MSMEG_2997	MSMEG_2233	Conserved hypothetical protein.	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF00441.	0.530
ABK70553.1	ABK75099.1	MSMEG_2997	MSMEG_2993	Conserved hypothetical protein.	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771.	0.646
ABK71672.1	ABK70325.1	MSMEG_0578	MSMEG_6016	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.771
ABK71672.1	ABK70553.1	MSMEG_0578	MSMEG_2997	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	Conserved hypothetical protein.	0.782
ABK71672.1	ABK72105.1	MSMEG_0578	MSMEG_2223	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.760
ABK71672.1	ABK72194.1	MSMEG_0578	MSMEG_4806	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.778
ABK71672.1	ABK73891.1	MSMEG_0578	MSMEG_2233	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF00441.	0.811
ABK71672.1	ABK74441.1	MSMEG_0578	MSMEG_5618	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.775
ABK71672.1	ABK75099.1	MSMEG_0578	MSMEG_2993	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	acyl-CoA dehydrogenase, C- domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771.	0.776
ABK71672.1	ABK75177.1	MSMEG_0578	MSMEG_6512	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.759
ABK71672.1	ABK75437.1	MSMEG_0578	MSMEG_0580	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	Conserved hypothetical protein.	0.813
ABK71672.1	ABK76167.1	MSMEG_0578	MSMEG_0577	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	Major facilitator superfamily protein, putative; Identified by match to protein family HMM PF07690.	0.780
ABK72105.1	ABK70325.1	MSMEG_2223	MSMEG_6016	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.591
ABK72105.1	ABK70553.1	MSMEG_2223	MSMEG_2997	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Conserved hypothetical protein.	0.484
ABK72105.1	ABK71672.1	MSMEG_2223	MSMEG_0578	Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase, middle domain protein; Identified by match to protein family HMM PF02770.	0.760

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About