Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71325.1 | ABK71573.1 | MSMEG_0627 | MSMEG_0629 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Trans-aconitate 2-methyltransferase. | 0.500 |
| ABK71325.1 | ABK72876.1 | MSMEG_0627 | MSMEG_0014 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911. | 0.437 |
| ABK71325.1 | ABK73177.1 | MSMEG_0627 | MSMEG_0625 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Conserved hypothetical protein. | 0.745 |
| ABK71325.1 | ABK74358.1 | MSMEG_0627 | MSMEG_3241 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Conserved hypothetical protein. | 0.468 |
| ABK71325.1 | ABK74962.1 | MSMEG_0627 | MSMEG_6401 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Prenyltransferase, UbiA family protein; Involved in the biosynthesis of decaprenylphosphoryl arabinose (DPA) a precursor for arabinan synthesis in mycobacterial cell wall biosynthesis. Catalyzes the transfer of a 5-phosphoribosyl residue from phosphoribose diphosphate (pRpp) to decaprenyl phosphate (DP) to form decaprenylphosphoryl-5-phosphoribose (DPPR). | 0.401 |
| ABK71325.1 | ABK75356.1 | MSMEG_0627 | MSMEG_0628 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Identified by match to protein family HMM PF04909. | 0.682 |
| ABK71325.1 | ABK75880.1 | MSMEG_0627 | MSMEG_0995 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Glycosyl transferase, family protein 2; Identified by match to protein family HMM PF00535. | 0.402 |
| ABK71325.1 | ABK76211.1 | MSMEG_0627 | MSMEG_4987 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | Glycosyl transferase; Identified by match to protein family HMM PF00535; match to protein family HMM PF04138. | 0.856 |
| ABK71325.1 | fmt | MSMEG_0627 | MSMEG_3064 | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.430 |
| ABK71573.1 | ABK71325.1 | MSMEG_0629 | MSMEG_0627 | Trans-aconitate 2-methyltransferase. | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | 0.500 |
| ABK71573.1 | ABK73177.1 | MSMEG_0629 | MSMEG_0625 | Trans-aconitate 2-methyltransferase. | Conserved hypothetical protein. | 0.739 |
| ABK71573.1 | ABK75356.1 | MSMEG_0629 | MSMEG_0628 | Trans-aconitate 2-methyltransferase. | Identified by match to protein family HMM PF04909. | 0.617 |
| ABK72876.1 | ABK71325.1 | MSMEG_0014 | MSMEG_0627 | Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911. | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | 0.437 |
| ABK72876.1 | fmt | MSMEG_0014 | MSMEG_3064 | Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.916 |
| ABK73177.1 | ABK71325.1 | MSMEG_0625 | MSMEG_0627 | Conserved hypothetical protein. | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | 0.745 |
| ABK73177.1 | ABK71573.1 | MSMEG_0625 | MSMEG_0629 | Conserved hypothetical protein. | Trans-aconitate 2-methyltransferase. | 0.739 |
| ABK73177.1 | ABK75356.1 | MSMEG_0625 | MSMEG_0628 | Conserved hypothetical protein. | Identified by match to protein family HMM PF04909. | 0.789 |
| ABK74358.1 | ABK71325.1 | MSMEG_3241 | MSMEG_0627 | Conserved hypothetical protein. | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | 0.468 |
| ABK74962.1 | ABK71325.1 | MSMEG_6401 | MSMEG_0627 | Prenyltransferase, UbiA family protein; Involved in the biosynthesis of decaprenylphosphoryl arabinose (DPA) a precursor for arabinan synthesis in mycobacterial cell wall biosynthesis. Catalyzes the transfer of a 5-phosphoribosyl residue from phosphoribose diphosphate (pRpp) to decaprenyl phosphate (DP) to form decaprenylphosphoryl-5-phosphoribose (DPPR). | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | 0.401 |
| ABK75356.1 | ABK71325.1 | MSMEG_0628 | MSMEG_0627 | Identified by match to protein family HMM PF04909. | Glycosyl transferase, family protein 39; Identified by match to protein family HMM PF02366. | 0.682 |
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