Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70019.1 | ABK76194.1 | MSMEG_1578 | MSMEG_0773 | Peptidase M22, glycoprotease; Identified by match to protein family HMM PF00814. | Acetyltransferase; Identified by match to protein family HMM PF00583. | 0.493 |
ABK70370.1 | ABK76194.1 | MSMEG_5458 | MSMEG_0773 | Cyclic nucleotide-binding protein; Catalyzes specifically the acetylation of the epsilon-amino group of a highly conserved lysine residue in acetyl-CoA synthetase (ACS) and of the universal stress protein (USP) MSMEG_4207. Acetylation results in the inactivation of ACS activity and could be important for mycobacteria to adjust to environmental changes. | Acetyltransferase; Identified by match to protein family HMM PF00583. | 0.408 |
ABK72419.1 | ABK73352.1 | MSMEG_0771 | MSMEG_0772 | Putative oxidoreductase YqjQ; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Phytase. | 0.564 |
ABK72419.1 | ABK76194.1 | MSMEG_0771 | MSMEG_0773 | Putative oxidoreductase YqjQ; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Acetyltransferase; Identified by match to protein family HMM PF00583. | 0.433 |
ABK73352.1 | ABK72419.1 | MSMEG_0772 | MSMEG_0771 | Phytase. | Putative oxidoreductase YqjQ; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.564 |
ABK73352.1 | ABK76194.1 | MSMEG_0772 | MSMEG_0773 | Phytase. | Acetyltransferase; Identified by match to protein family HMM PF00583. | 0.548 |
ABK76194.1 | ABK70019.1 | MSMEG_0773 | MSMEG_1578 | Acetyltransferase; Identified by match to protein family HMM PF00583. | Peptidase M22, glycoprotease; Identified by match to protein family HMM PF00814. | 0.493 |
ABK76194.1 | ABK70370.1 | MSMEG_0773 | MSMEG_5458 | Acetyltransferase; Identified by match to protein family HMM PF00583. | Cyclic nucleotide-binding protein; Catalyzes specifically the acetylation of the epsilon-amino group of a highly conserved lysine residue in acetyl-CoA synthetase (ACS) and of the universal stress protein (USP) MSMEG_4207. Acetylation results in the inactivation of ACS activity and could be important for mycobacteria to adjust to environmental changes. | 0.408 |
ABK76194.1 | ABK72419.1 | MSMEG_0773 | MSMEG_0771 | Acetyltransferase; Identified by match to protein family HMM PF00583. | Putative oxidoreductase YqjQ; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.433 |
ABK76194.1 | ABK73352.1 | MSMEG_0773 | MSMEG_0772 | Acetyltransferase; Identified by match to protein family HMM PF00583. | Phytase. | 0.548 |