Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69677.1 | ABK73517.1 | MSMEG_1937 | MSMEG_4907 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | Identified by match to protein family HMM PF01398. | 0.773 |
| ABK69677.1 | FbiC | MSMEG_1937 | MSMEG_5126 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | FO synthase; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423. | 0.641 |
| ABK69677.1 | thiE | MSMEG_1937 | MSMEG_0789 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.846 |
| ABK69677.1 | thiG | MSMEG_1937 | MSMEG_0793 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.947 |
| ABK69677.1 | thiO | MSMEG_1937 | MSMEG_0791 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | Glycine oxidase ThiO; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352. | 0.481 |
| ABK69677.1 | thiS | MSMEG_1937 | MSMEG_0792 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. | 0.916 |
| ABK69677.1 | tilS | MSMEG_1937 | MSMEG_6111 | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.601 |
| ABK71634.1 | ABK73517.1 | MSMEG_2198 | MSMEG_4907 | Identified by match to protein family HMM PF00899. | Identified by match to protein family HMM PF01398. | 0.617 |
| ABK71634.1 | FbiC | MSMEG_2198 | MSMEG_5126 | Identified by match to protein family HMM PF00899. | FO synthase; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423. | 0.533 |
| ABK71634.1 | thiE | MSMEG_2198 | MSMEG_0789 | Identified by match to protein family HMM PF00899. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.646 |
| ABK71634.1 | thiG | MSMEG_2198 | MSMEG_0793 | Identified by match to protein family HMM PF00899. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.762 |
| ABK71634.1 | thiS | MSMEG_2198 | MSMEG_0792 | Identified by match to protein family HMM PF00899. | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. | 0.882 |
| ABK71634.1 | tilS | MSMEG_2198 | MSMEG_6111 | Identified by match to protein family HMM PF00899. | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.473 |
| ABK73379.1 | ABK75055.1 | MSMEG_0794 | MSMEG_0796 | Conserved hypothetical protein. | ABC transporter integral membrane subunit. | 0.769 |
| ABK73379.1 | thiE | MSMEG_0794 | MSMEG_0789 | Conserved hypothetical protein. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.621 |
| ABK73379.1 | thiG | MSMEG_0794 | MSMEG_0793 | Conserved hypothetical protein. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.786 |
| ABK73379.1 | thiO | MSMEG_0794 | MSMEG_0791 | Conserved hypothetical protein. | Glycine oxidase ThiO; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352. | 0.785 |
| ABK73379.1 | thiS | MSMEG_0794 | MSMEG_0792 | Conserved hypothetical protein. | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. | 0.785 |
| ABK73517.1 | ABK69677.1 | MSMEG_4907 | MSMEG_1937 | Identified by match to protein family HMM PF01398. | Molybdopterin biosynthesis protein MoeB; Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237. | 0.773 |
| ABK73517.1 | ABK71634.1 | MSMEG_4907 | MSMEG_2198 | Identified by match to protein family HMM PF01398. | Identified by match to protein family HMM PF00899. | 0.617 |
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