ABK70132.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70132.1

CBS domain protein; Identified by match to protein family HMM PF00571. (152 aa)

Predicted Functional Partners:

ABK75802.1

0.963

guaA

0.848

saeC

0.814

ABK70810.1

0.732

ABK71972.1

0.710

ABK70647.1

0.642

ABK75945.1

0.636

ABK72306.1

0.632

ABK70744.1

0.588

sthA

0.574

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70132.1	ABK70647.1	MSMEG_0852	MSMEG_0856	CBS domain protein; Identified by match to protein family HMM PF00571.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.642
ABK70132.1	ABK70744.1	MSMEG_0852	MSMEG_0172	CBS domain protein; Identified by match to protein family HMM PF00571.	Probable conserved transmembrane protein, putative.	0.588
ABK70132.1	ABK70810.1	MSMEG_0852	MSMEG_0853	CBS domain protein; Identified by match to protein family HMM PF00571.	Conserved hypothetical protein.	0.732
ABK70132.1	ABK71972.1	MSMEG_0852	MSMEG_0854	CBS domain protein; Identified by match to protein family HMM PF00571.	Two-component system sensor kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.	0.710
ABK70132.1	ABK72306.1	MSMEG_0852	MSMEG_0033	CBS domain protein; Identified by match to protein family HMM PF00571.	Protein phosphatase 2C; Identified by match to protein family HMM PF00481.	0.632
ABK70132.1	ABK75802.1	MSMEG_0852	MSMEG_0851	CBS domain protein; Identified by match to protein family HMM PF00571.	Citrate transporter; Identified by match to protein family HMM PF02040; match to protein family HMM PF03600.	0.963
ABK70132.1	ABK75945.1	MSMEG_0852	MSMEG_1928	CBS domain protein; Identified by match to protein family HMM PF00571.	Identified by match to protein family HMM PF00481.	0.636
ABK70132.1	guaA	MSMEG_0852	MSMEG_1610	CBS domain protein; Identified by match to protein family HMM PF00571.	Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.848
ABK70132.1	saeC	MSMEG_0852	MSMEG_0046	CBS domain protein; Identified by match to protein family HMM PF00571.	Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain.	0.814
ABK70132.1	sthA	MSMEG_0852	MSMEG_2748	CBS domain protein; Identified by match to protein family HMM PF00571.	Soluble pyridine nucleotide transhydrogenase; Identified by similarity to SP:P27306; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.	0.574
ABK70647.1	ABK70132.1	MSMEG_0856	MSMEG_0852	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.642
ABK70647.1	ABK70810.1	MSMEG_0856	MSMEG_0853	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Conserved hypothetical protein.	0.540
ABK70647.1	ABK71972.1	MSMEG_0856	MSMEG_0854	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Two-component system sensor kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.	0.987
ABK70647.1	ABK75802.1	MSMEG_0856	MSMEG_0851	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Citrate transporter; Identified by match to protein family HMM PF02040; match to protein family HMM PF03600.	0.568
ABK70744.1	ABK70132.1	MSMEG_0172	MSMEG_0852	Probable conserved transmembrane protein, putative.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.588
ABK70810.1	ABK70132.1	MSMEG_0853	MSMEG_0852	Conserved hypothetical protein.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.732
ABK70810.1	ABK70647.1	MSMEG_0853	MSMEG_0856	Conserved hypothetical protein.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.540
ABK70810.1	ABK71972.1	MSMEG_0853	MSMEG_0854	Conserved hypothetical protein.	Two-component system sensor kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.	0.552
ABK70810.1	ABK75802.1	MSMEG_0853	MSMEG_0851	Conserved hypothetical protein.	Citrate transporter; Identified by match to protein family HMM PF02040; match to protein family HMM PF03600.	0.687
ABK71972.1	ABK70132.1	MSMEG_0854	MSMEG_0852	Two-component system sensor kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730.	CBS domain protein; Identified by match to protein family HMM PF00571.	0.710