Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70814.1 | ABK71825.1 | MSMEG_0862 | MSMEG_0863 | Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | 0.800 |
| ABK70814.1 | ABK73210.1 | MSMEG_0862 | MSMEG_0858 | Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family. | 0.853 |
| ABK70814.1 | ABK75709.1 | MSMEG_0862 | MSMEG_0860 | Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | CDP-diacylglycerol--serine O-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.747 |
| ABK70814.1 | psd | MSMEG_0862 | MSMEG_0861 | Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.748 |
| ABK71448.1 | ABK72388.1 | MSMEG_6553 | MSMEG_6554 | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | 0.998 |
| ABK71448.1 | ABK73210.1 | MSMEG_6553 | MSMEG_0858 | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family. | 0.803 |
| ABK71448.1 | ABK74628.1 | MSMEG_6553 | MSMEG_0171 | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | Histone deacetylase superfamily protein; Identified by match to protein family HMM PF00850. | 0.638 |
| ABK71448.1 | mpa | MSMEG_6553 | MSMEG_3902 | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | ATPase, AAA family protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.607 |
| ABK71448.1 | prcA | MSMEG_6553 | MSMEG_3894 | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. The M.smegmatis proteasome is able to cleave oligopeptides after hydrophobic residues, thus displaying chymotrypsin-like activity. In complex with the ATPase Mpa, degrades protein targets conjugated to a prokaryotic ubiquitin- like protein (Pup). Identified substrates of the M.smegmatis proteasome are the pupylated SodA and Ino1 proteins. The Pup- proteasome system (PPS) is essential for survival under starvation; PPS likely functions to recycle a [...] | 0.507 |
| ABK71448.1 | prcB | MSMEG_6553 | MSMEG_3895 | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. The M.smegmatis proteasome is able to cleave oligopeptides after hydrophobic residues, thus displaying chymotrypsin-like activity. In complex with the ATPase Mpa, degrades protein targets conjugated to a prokaryotic ubiquitin- like protein (Pup). Among the identified substrates of the M.smegmatis proteasome are the pupylated SodA and Ino1 proteins. The Pup-proteasome system (PPS) is essential for survival under starvation; PPS likely functions to r [...] | 0.572 |
| ABK71825.1 | ABK70814.1 | MSMEG_0863 | MSMEG_0862 | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | 0.800 |
| ABK71825.1 | ABK72388.1 | MSMEG_0863 | MSMEG_6554 | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | 0.417 |
| ABK71825.1 | ABK73210.1 | MSMEG_0863 | MSMEG_0858 | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family. | 0.768 |
| ABK71825.1 | ABK75709.1 | MSMEG_0863 | MSMEG_0860 | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | CDP-diacylglycerol--serine O-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.679 |
| ABK71825.1 | psd | MSMEG_0863 | MSMEG_0861 | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.722 |
| ABK72388.1 | ABK71448.1 | MSMEG_6554 | MSMEG_6553 | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.998 |
| ABK72388.1 | ABK71825.1 | MSMEG_6554 | MSMEG_0863 | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | Short chain dehydrogenase; Identified by match to protein family HMM PF00106. | 0.417 |
| ABK72388.1 | ABK73210.1 | MSMEG_6554 | MSMEG_0858 | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | Cell division control protein Cdc48; Identified by match to protein family HMM PF00004; match to protein family HMM PF02359; Belongs to the AAA ATPase family. | 0.760 |
| ABK72388.1 | ABK74628.1 | MSMEG_6554 | MSMEG_0171 | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | Histone deacetylase superfamily protein; Identified by match to protein family HMM PF00850. | 0.639 |
| ABK72388.1 | mpa | MSMEG_6554 | MSMEG_3902 | Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021. | ATPase, AAA family protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.546 |
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