STRINGSTRING
ABK69665.1 ABK69665.1 lpdA lpdA ABK76061.1 ABK76061.1 ABK70917.1 ABK70917.1 ABK73720.1 ABK73720.1 ung ung ABK72871.1 ABK72871.1 ABK75342.1 ABK75342.1 ABK71959.1 ABK71959.1 ABK70879.1 ABK70879.1 bfr bfr
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK69665.1Probable conserved membrane protein. (89 aa)    
Predicted Functional Partners:
lpdA
Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350.
  
    0.896
ABK76061.1
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.585
ABK70917.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05610.
  
    0.558
ABK73720.1
Conserved hypothetical protein.
   
  
 0.523
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
   
  
 0.522
ABK72871.1
NADH pyrophosphatase; Identified by match to protein family HMM PF00293.
   
  
 0.519
ABK75342.1
Identified by match to protein family HMM PF03972.
      
 0.518
ABK71959.1
Glutamate transporter permease protein GluD; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
   
  
 0.517
ABK70879.1
Major facilitator superfamily protein MFS_1; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
      
 0.517
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.515
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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