STRINGSTRING
ABK72985.1 ABK72985.1 ABK72796.1 ABK72796.1 ABK69958.1 ABK69958.1 hemL hemL ABK73972.1 ABK73972.1 ccsB ccsB gpmA gpmA ABK73778.1 ABK73778.1 ABK72219.1 ABK72219.1 whiB2 whiB2 whiB whiB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72985.1Identified by match to protein family HMM PF00300. (202 aa)    
Predicted Functional Partners:
ABK72796.1
Conserved hypothetical protein.
  
 
 0.993
ABK69958.1
Conserved membrane protein; Identified by match to protein family HMM PF05140.
 
    0.942
hemL
Glutamate-1-semialdehyde-2,1-aminomutase; Identified by match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM TIGR00713.
  
    0.940
ABK73972.1
Cytochrome C biogenesis protein transmembrane region; Identified by match to protein family HMM PF02683.
  
  
 0.938
ccsB
Cytochrome c-type biogenesis protein CcsB; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144.
  
    0.932
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
 
 0.759
ABK73778.1
Conserved hypothetical protein.
  
    0.746
ABK72219.1
Conserved hypothetical protein.
  
    0.733
whiB2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity); Belongs to the WhiB family.
  
    0.726
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
    0.723
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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