Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70510.1 | ABK72001.1 | MSMEG_0982 | MSMEG_0984 | Identified by match to protein family HMM TIGR02122. | Trap transporter, 4tm/12tm fusion protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123. | 0.997 |
ABK70510.1 | ABK74456.1 | MSMEG_0982 | MSMEG_0981 | Identified by match to protein family HMM TIGR02122. | Two-component system regulator; Identified by match to protein family HMM PF00072. | 0.512 |
ABK70510.1 | ABK76035.1 | MSMEG_0982 | MSMEG_3350 | Identified by match to protein family HMM TIGR02122. | TRAP transporter, DctM-like membrane protein; Identified by match to protein family HMM PF06808. | 0.419 |
ABK72001.1 | ABK70510.1 | MSMEG_0984 | MSMEG_0982 | Trap transporter, 4tm/12tm fusion protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123. | Identified by match to protein family HMM TIGR02122. | 0.997 |
ABK72001.1 | ABK74456.1 | MSMEG_0984 | MSMEG_0981 | Trap transporter, 4tm/12tm fusion protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123. | Two-component system regulator; Identified by match to protein family HMM PF00072. | 0.515 |
ABK72001.1 | ABK76035.1 | MSMEG_0984 | MSMEG_3350 | Trap transporter, 4tm/12tm fusion protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123. | TRAP transporter, DctM-like membrane protein; Identified by match to protein family HMM PF06808. | 0.472 |
ABK74456.1 | ABK70510.1 | MSMEG_0981 | MSMEG_0982 | Two-component system regulator; Identified by match to protein family HMM PF00072. | Identified by match to protein family HMM TIGR02122. | 0.512 |
ABK74456.1 | ABK72001.1 | MSMEG_0981 | MSMEG_0984 | Two-component system regulator; Identified by match to protein family HMM PF00072. | Trap transporter, 4tm/12tm fusion protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123. | 0.515 |
ABK76035.1 | ABK70510.1 | MSMEG_3350 | MSMEG_0982 | TRAP transporter, DctM-like membrane protein; Identified by match to protein family HMM PF06808. | Identified by match to protein family HMM TIGR02122. | 0.419 |
ABK76035.1 | ABK72001.1 | MSMEG_3350 | MSMEG_0984 | TRAP transporter, DctM-like membrane protein; Identified by match to protein family HMM PF06808. | Trap transporter, 4tm/12tm fusion protein; Identified by match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR02123. | 0.472 |