Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK71081.1 | ABK72117.1 | MSMEG_1030 | MSMEG_1033 | Monooxygenase. | Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | 0.464 |
ABK71081.1 | ABK72321.1 | MSMEG_1030 | MSMEG_1029 | Monooxygenase. | Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440. | 0.526 |
ABK71081.1 | ABK72906.1 | MSMEG_1030 | MSMEG_0755 | Monooxygenase. | Cobalt-zinc-cadmium resistance protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297. | 0.404 |
ABK71081.1 | ABK73298.1 | MSMEG_1030 | MSMEG_5053 | Monooxygenase. | Short chain alcohol dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.581 |
ABK71081.1 | ABK73392.1 | MSMEG_1030 | MSMEG_6532 | Monooxygenase. | Transcriptional regulatory protein; Identified by match to protein family HMM PF00440. | 0.404 |
ABK71081.1 | ABK73611.1 | MSMEG_1030 | MSMEG_3010 | Monooxygenase. | Acetyl-hydrolase; Identified by match to protein family HMM PF07859. | 0.415 |
ABK71081.1 | ABK74087.1 | MSMEG_1030 | MSMEG_1032 | Monooxygenase. | Hypothetical protein; Identified by Glimmer2; putative. | 0.441 |
ABK71081.1 | ABK74273.1 | MSMEG_1030 | MSMEG_6322 | Monooxygenase. | Bifunctional wax ester synthase/acyl-CoA diacylglycerol acyltransferase; Identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; Belongs to the long-chain O-acyltransferase family. | 0.475 |
ABK71081.1 | ABK75160.1 | MSMEG_1030 | MSMEG_1031 | Monooxygenase. | Conserved hypothetical protein. | 0.551 |
ABK71081.1 | ABK75990.1 | MSMEG_1030 | MSMEG_5720 | Monooxygenase. | Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. | 0.473 |
ABK72117.1 | ABK71081.1 | MSMEG_1033 | MSMEG_1030 | Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | Monooxygenase. | 0.464 |
ABK72117.1 | ABK74087.1 | MSMEG_1033 | MSMEG_1032 | Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.741 |
ABK72117.1 | ABK75160.1 | MSMEG_1033 | MSMEG_1031 | Ribonucleoside-diphosphate reductase, beta subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | Conserved hypothetical protein. | 0.600 |
ABK72321.1 | ABK71081.1 | MSMEG_1029 | MSMEG_1030 | Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440. | Monooxygenase. | 0.526 |
ABK72906.1 | ABK71081.1 | MSMEG_0755 | MSMEG_1030 | Cobalt-zinc-cadmium resistance protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297. | Monooxygenase. | 0.404 |
ABK73298.1 | ABK71081.1 | MSMEG_5053 | MSMEG_1030 | Short chain alcohol dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Monooxygenase. | 0.581 |
ABK73298.1 | ABK73611.1 | MSMEG_5053 | MSMEG_3010 | Short chain alcohol dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Acetyl-hydrolase; Identified by match to protein family HMM PF07859. | 0.434 |
ABK73298.1 | ABK74273.1 | MSMEG_5053 | MSMEG_6322 | Short chain alcohol dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Bifunctional wax ester synthase/acyl-CoA diacylglycerol acyltransferase; Identified by match to protein family HMM PF03007; match to protein family HMM TIGR02946; Belongs to the long-chain O-acyltransferase family. | 0.550 |
ABK73298.1 | ABK75990.1 | MSMEG_5053 | MSMEG_5720 | Short chain alcohol dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. | 0.461 |
ABK73392.1 | ABK71081.1 | MSMEG_6532 | MSMEG_1030 | Transcriptional regulatory protein; Identified by match to protein family HMM PF00440. | Monooxygenase. | 0.404 |
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